F. Ahmad, K. Fazili, T. A. Sofi, Bashir A. Sheikh, A. Waza, Rabiya Rashid, Tantry Tariq Gani
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引用次数: 6
Abstract
The study reports the results of molecular characterization of the Internal Transcribed Spacer (ITS) of ribosomal DNA of 3 Monogenean species using polymerase chain reaction (PCR), nucleotide sequencing and construction of phylogenetic trees from different fish hosts of Kashmir. The present study shows that the size of the amplified product is 873bp long for D. kashmirensis, 1120bp long in D. aegyptensis and 687bp long in D. guptai revealing that there are intraspecific differences in their base pair lengths. Guanine and Cytocine (G+C) content of three Diplozoon species was found nearly constant for three species i.e., 47% (D. kashmirensis); 47% (D. aegyptensis) and 48% (D. guptai), this GC richness contributes to physical attributes of RNA structures, as there is correlation between GC content and optimal growth temperature. An important observation during the present study has been noticed that Schizothorax niger is infected by all the three species of Diplozoidae; D. kashmirensis; D. aegyptensis and D. guptai, but when all six fishes were collected simultaneously, parasitism by all the parasite species was never observed. Phylogenetic trees Maximum Parsimony (MP), Maximum Likelihood (ML) and Neighbor Joining (NJ) showed that D. kashmirensis and D. aegyptensis share a common host Carassius carassius and S. niger.
采用聚合酶链式反应(PCR)技术对克什米尔地区3种单基因鱼类核糖体DNA的内部转录间隔区(ITS)进行了分子鉴定、核苷酸测序和系统发育树构建。本研究结果表明,扩增产物长度分别为873bp、1120bp和687bp,表明它们的碱基对长度存在种内差异。三种双plozoon的鸟嘌呤和胞嘧啶(G+C)含量基本不变,分别为47% (D. kashmirensis);47%(埃及伊蚊)和48%(古泰伊蚊),这种GC丰富度有助于RNA结构的物理属性,因为GC含量与最佳生长温度之间存在相关性。本研究的一个重要发现是,黑裂胸虫可被所有三种梁虫科昆虫感染;d . kashmirensis;埃及伊蚊和古泰伊蚊均有寄生,但同时采集6种鱼时,未观察到所有寄生虫的寄生情况。最大简约性(MP)、最大似然性(ML)和邻居联结(NJ)的系统进化树分析表明,喀什米尔伊蚊和埃及伊蚊有共同的寄主卡拉西斯(Carassius)和尼日尔伊蚊。