Triticale field phenotyping using RGB camera for ear counting and yield estimation.

IF 2 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Journal of Applied Genetics Pub Date : 2024-05-01 Epub Date: 2024-02-14 DOI:10.1007/s13353-024-00835-6
Piotr Stefański, Sajid Ullah, Przemysław Matysik, Krystyna Rybka
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Abstract

Triticale (X Triticosecale Wittmack), a wheat-rye small grain crop hybrid, combines wheat and rye attributes in one hexaploid genome. It is characterized by high adaptability to adverse environmental conditions: drought, soil acidity, salinity and heavy metal ions, poorer soil quality, and waterlogging. So that its cultivation is prospective in a changing climate. Here, we describe RGB on-ground phenotyping of field-grown eighteen triticale market-available cultivars, made in naturally changing light conditions, in two consecutive winter cereals growing seasons: 2018-2019 and 2019-2020. The number of ears was counted on top-down images with an accuracy of 95% and mean average precision (mAP) of 0.71 using advanced object detection algorithm YOLOv4, with ensemble modeling of field imaging captured in two different illumination conditions. A correlation between the number of ears and yield was achieved at the statistical importance of 0.16 for data from 2019. Results are discussed from the perspective of modern breeding and phenotyping bottleneck.

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使用 RGB 摄像机对大麦田间表型进行计穗和估产。
Triticale(X Triticosecale Wittmack)是一种小麦-黑麦小粒作物杂交种,在一个六倍体基因组中结合了小麦和黑麦的特性。其特点是对不利环境条件的适应性强:干旱、土壤酸度、盐度和重金属离子、较差的土壤质量和涝害。因此,在多变的气候条件下,它的种植前景广阔。在此,我们介绍了在2018-2019年和2019-2020年连续两个冬季谷物生长季节,在自然变化的光照条件下,对田间种植的18个市场上可买到的三粒谷栽培品种进行的RGB现场表型分析。使用先进的物体检测算法 YOLOv4,通过对两种不同光照条件下捕获的田间成像进行集合建模,在自上而下的图像上计算穗数,准确率为 95%,平均精度(mAP)为 0.71。在 2019 年的数据中,穗数与产量之间的相关性达到了 0.16 的统计重要性。研究结果从现代育种和表型瓶颈的角度进行了讨论。
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来源期刊
Journal of Applied Genetics
Journal of Applied Genetics 生物-生物工程与应用微生物
CiteScore
4.30
自引率
4.20%
发文量
62
审稿时长
6-12 weeks
期刊介绍: The Journal of Applied Genetics is an international journal on genetics and genomics. It publishes peer-reviewed original papers, short communications (including case reports) and review articles focused on the research of applicative aspects of plant, human, animal and microbial genetics and genomics.
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