Genetic diversity of Gallus sp. in Southeast Asia based on d-lopp: In silico study.

IF 1.5 Q3 AGRICULTURE, DAIRY & ANIMAL SCIENCE Journal of Advanced Veterinary and Animal Research Pub Date : 2023-12-31 eCollection Date: 2023-12-01 DOI:10.5455/javar.2023.j738

Zultinur Muttaqin, Tike Sartika, Ferdy Saputra

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Abstract

Objective: This study was conducted to analyze the matrilineal structure of Gallus sp. in Southeast Asia, especially in the D-loop region.

Materials and method: A total of 563 sequences from eight countries (Laos, Myanmar, Vietnam, Malaysia, Indonesia, Cambodia, the Philippines, and Thailand) in Southeast Asia are used in this study. Data collected from National Center for Biotechnology Information (NCBI) regarding the genus Gallus sp. in a Southeast Asian country. Data analysis was performed using MEGA 7.2 and DnaSP v6.

Results: In the haplotype found in Gallus sp. in Southeast Asia, there are 89 haplotypes. Using a neighbor-joining (Nj) analysis, 89 haplotypes found three haplogroups for Gallus sp. in Southeast Asia. In Southeast Asia, the genetic diversity of the d-loop is exceptionally high, with a haplotype diversity value of 0.524 to 1.

Conclusion: D-loop cannot be used as a specific marker for breeds or country-specifics.

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基于 d-lopp 的东南亚 Gallus sp：硅学研究。

研究目的本研究旨在分析东南亚地区家鸡的母系结构，尤其是D-环区的母系结构：本研究使用了来自东南亚 8 个国家（老挝、缅甸、越南、马来西亚、印度尼西亚、柬埔寨、菲律宾和泰国）的 563 个序列。数据收集自美国国家生物技术信息中心（NCBI），涉及东南亚国家的高卢鸡属（Gallus sp.）。数据分析使用 MEGA 7.2 和 DnaSP v6.Results 进行：结果：在东南亚发现的高卢鸡单倍型中有 89 个单倍型。通过邻接（Nj）分析，89 个单倍型中发现了东南亚地区高卢鸡的三个单倍群。在东南亚，D-环的遗传多样性特别高，单倍型多样性值为 0.524 至 1.结论：结论：D-环不能作为品种或国家的特定标记。

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来源期刊

Journal of Advanced Veterinary and Animal Research Veterinary-Veterinary (all)

CiteScore

2.70

自引率

7.10%

发文量

审稿时长

6 weeks

期刊介绍： Journal of Advanced Veterinary and Animal Research (JAVAR) - is an open access, international, peer-reviewed, quarterly, highly-indexed scientific journal publishing original research findings and reviews on all aspects of veterinary and animal sciences. Basic and applied researches on- - Anatomy & histology - Animal health economics - Animal nutrition - Animal reproduction - Animal science - Antimicrobial resistance (AMR) - Biochemistry - Biotechnology - Dairy science - Epidemiology - Food hygiene and technology - Genetics and breeding - Immunology - Microbiology - Parasitology - Pathology - Pharmacology & toxicology - Physiology - Poultry science - Preventive veterinary medicine - Public health - Surgery & obstetrics - Veterinary extension studies - Wildlife & aquatic medicine - Zoo animal medicine.