Genetic diversity of Gallus sp. in Southeast Asia based on d-lopp: In silico study.

IF 16.4 1区化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2023-12-31 eCollection Date: 2023-12-01 DOI:10.5455/javar.2023.j738

Zultinur Muttaqin, Tike Sartika, Ferdy Saputra

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Abstract

Objective: This study was conducted to analyze the matrilineal structure of Gallus sp. in Southeast Asia, especially in the D-loop region.

Materials and method: A total of 563 sequences from eight countries (Laos, Myanmar, Vietnam, Malaysia, Indonesia, Cambodia, the Philippines, and Thailand) in Southeast Asia are used in this study. Data collected from National Center for Biotechnology Information (NCBI) regarding the genus Gallus sp. in a Southeast Asian country. Data analysis was performed using MEGA 7.2 and DnaSP v6.

Results: In the haplotype found in Gallus sp. in Southeast Asia, there are 89 haplotypes. Using a neighbor-joining (Nj) analysis, 89 haplotypes found three haplogroups for Gallus sp. in Southeast Asia. In Southeast Asia, the genetic diversity of the d-loop is exceptionally high, with a haplotype diversity value of 0.524 to 1.

Conclusion: D-loop cannot be used as a specific marker for breeds or country-specifics.

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基于 d-lopp 的东南亚 Gallus sp：硅学研究。

研究目的本研究旨在分析东南亚地区家鸡的母系结构，尤其是D-环区的母系结构：本研究使用了来自东南亚 8 个国家（老挝、缅甸、越南、马来西亚、印度尼西亚、柬埔寨、菲律宾和泰国）的 563 个序列。数据收集自美国国家生物技术信息中心（NCBI），涉及东南亚国家的高卢鸡属（Gallus sp.）。数据分析使用 MEGA 7.2 和 DnaSP v6.Results 进行：结果：在东南亚发现的高卢鸡单倍型中有 89 个单倍型。通过邻接（Nj）分析，89 个单倍型中发现了东南亚地区高卢鸡的三个单倍群。在东南亚，D-环的遗传多样性特别高，单倍型多样性值为 0.524 至 1.结论：结论：D-环不能作为品种或国家的特定标记。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Accounts of Chemical Research 化学-化学综合

CiteScore

31.40

自引率

1.10%

发文量

312

审稿时长

2 months

期刊介绍： Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.