Characterization of circRNA expression profiles associated with non-Mendelian inheritance in feather growth of chickens.

IF 1.6 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE British Poultry Science Pub Date : 2024-08-01 Epub Date: 2024-05-08 DOI:10.1080/00071668.2024.2339485
M Qiu, C Yu, S Zhu, C Hu, L Yang, X Song, B Xia, X Jiang, H Du, Q Li, Z Zhang, C Yang
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Abstract

1. Non-coding RNAs, such as miRNAs, play a crucial role in chicken feather growth rate. However, circular RNA (circRNA) expression profiles in fast- and slow-feathering chickens that follow and do not follow Mendelian inheritance are unclear.2. The circRNA expression profiles was analysed by RNA sequencing of hair follicles of slow-feathering chickens that follow genetic rules and fast-feathering chickens that did not follow genetic rules. Differentially expressed circRNA-miRNA-mRNA competing endogenous RNA (ceRNA) network was then constructed and the key factors and regulation mechanisms controlling feather growth rate were identified.3. The results revealed that 67 circRNAs were significantly differentially expressed in hens, including 22 up-regulated and 45 down-regulated circRNAs in non-Mendelian inheritance-mediated fast-feathering hens compared with Mendelian inheritance-mediated slow-feathering hens. In addition, 16 significantly differentially expressed circRNAs were identified in cockerels, including nine up-regulated and seven down-regulated circRNAs in non-Mendelian inheritance-mediated fast- compared with Mendelian inheritance-mediated slow-feathering cocks. Moreover, circRNA-mediated ceRNA regulation of hair follicle formation was particularly abundant in the Jak-STAT, Wnt and Toll-like receptor signalling pathways. Furthermore, circABI3BP was seen to be a crucial circRNA in regulating feather growth rate, by binding with gga-miR-1649-5p to regulate SSTR2 expression.4. In conclusion, this study analysed circRNA expression profiles in fast- and slow-feathering chickens that follow and do not follow Mendelian inheritance, which laid the foundation for understanding the role of circRNA in chicken feather growth rate.

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与鸡羽毛生长的非孟德尔遗传相关的 circRNA 表达谱特征。
1.非编码 RNA(如 miRNA)在鸡的羽毛生长速度中起着至关重要的作用。然而,遵循和不遵循孟德尔遗传的快羽鸡和慢羽鸡的环状 RNA(circRNA)表达谱尚不清楚。 2. 通过对遵循遗传规则的慢羽鸡和不遵循遗传规则的快羽鸡的毛囊进行 RNA 测序,分析了环状 RNA 的表达谱。结果发现,67个circRNA在母鸡体内显著差异表达,其中非孟德尔遗传介导的快羽鸡与孟德尔遗传介导的慢羽鸡相比,上调22个circRNA,下调45个circRNA。此外,还在公鸡体内发现了 16 个表达明显不同的 circRNA,其中包括非孟德尔遗传介导的快羽公鸡与孟德尔遗传介导的慢羽公鸡相比,上调了 9 个 circRNA,下调了 7 个 circRNA。此外,在 Jak-STAT、Wnt 和 Toll 样受体信号通路中,circRNA 介导的 ceRNA 对毛囊形成的调控尤其丰富。此外,circABI3BP通过与gga-miR-1649-5p结合调控SSTR2的表达,被认为是调控羽毛生长率的关键circRNA。 总之,本研究分析了遵循和不遵循孟德尔遗传的快羽鸡和慢羽鸡的circRNA表达谱,为了解circRNA在鸡羽毛生长率中的作用奠定了基础。
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来源期刊
British Poultry Science
British Poultry Science 农林科学-奶制品与动物科学
CiteScore
3.90
自引率
5.00%
发文量
88
审稿时长
4.5 months
期刊介绍: From its first volume in 1960, British Poultry Science has been a leading international journal for poultry scientists and advisers to the poultry industry throughout the world. Over 60% of the independently refereed papers published originate outside the UK. Most typically they report the results of biological studies with an experimental approach which either make an original contribution to fundamental science or are of obvious application to the industry. Subjects which are covered include: anatomy, embryology, biochemistry, biophysics, physiology, reproduction and genetics, behaviour, microbiology, endocrinology, nutrition, environmental science, food science, feeding stuffs and feeding, management and housing welfare, breeding, hatching, poultry meat and egg yields and quality.Papers that adopt a modelling approach or describe the scientific background to new equipment or apparatus directly relevant to the industry are also published. The journal also features rapid publication of Short Communications. Summaries of papers presented at the Spring Meeting of the UK Branch of the WPSA are published in British Poultry Abstracts .
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