Phylogenetic position of Discolaimium (Nematoda: Dorylaimida) from South Africa using 28S rDNA

Q3 Agricultural and Biological Sciences Research on Crops Pub Date : 2024-05-24 DOI:10.31830/2348-7542.2024.roc-1070
Mehrnoush Aminisarteshnizi
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Abstract

 Dorylaim nematodes inhabit soil and are predatory, primarily feeding on other nematodes. This predatory behaviour positions them as a potential natural solution to combat plant-parasitic nematodes. By preying on their fellow nematodes, they contribute significantly to ecological diversity. Therefore, this molecular study was conducted in 2022 at the University of Limpopo to identify the soil nematodes from South Africa using a 28S rDNA marker. The recovered nematode was extracted using the tray method. The Chelex method was used to extract DNA, and the nematode was identified as Discolaimium. Afterward, 28S rDNA was amplified using specific primers to identify the nematode. The Nblast analysis based on the small subunit ribosomal DNA showed that South African Discolaimium has a 97% similarity (MG921263) with the Chinese population of Discolaimium. Phylogenetic analysis using maximum likelihood placed this species with those molecularly identified as Discolaimium in the same clade with highly supported (100) bootstrap values. In conclusion, this species was properly identified using 28S rDNA. However, other DNA markers are recommended to understand the Discolaimium phylogeny better.
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利用 28S rDNA 确定南非 Discolaimium(线虫纲:Dorylaimida)的系统发育位置
Dorylaim 线虫栖息于土壤中,具有捕食性,主要以其他线虫为食。这种捕食行为使它们成为对付植物寄生线虫的潜在自然解决方案。通过捕食同类线虫,它们极大地促进了生态多样性。因此,这项分子研究于 2022 年在林波波大学进行,目的是利用 28S rDNA 标记鉴定南非的土壤线虫。采用托盘法提取回收的线虫。采用 Chelex 法提取 DNA,并确定该线虫为 Discolaimium。随后,使用特定引物扩增 28S rDNA,以确定线虫的身份。基于小亚基核糖体 DNA 的 Nblast 分析表明,南非盘尾丝虫与中国盘尾丝虫种群的相似度为 97%(MG921263)。利用最大似然法进行的系统进化分析将该物种与分子鉴定为 Discolaimium 的物种归入同一支系,并获得高度支持(100)引导值。总之,使用 28S rDNA 对该物种进行了正确鉴定。不过,为了更好地了解 Discolaimium 的系统发育,建议使用其他 DNA 标记。
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来源期刊
Research on Crops
Research on Crops Agricultural and Biological Sciences-Soil Science
CiteScore
1.50
自引率
0.00%
发文量
93
审稿时长
1 months
期刊介绍: The Research on Crops is a peer-reviewed journal publishing original research papers, review articles and short communications in English on all basic and applied aspects of crop sciences, agricultural water management, agro-climatology, agroforestry, agronomy, crop production, crop protection, cropping systems, food science & technology, genetics & plant breeding, horticulture, plant & soil science, plant biotechnology, plant nutrition, post-harvest management of crops, seed science, soil management & tillage, vegetables, weed science, agricultural engineering, agri-business, agricultural economics and extension, etc. The aim of the journal is to provide a forum for the scientific community to publish their latest research findings. The manuscripts submitted for publication should not contain data older than 4 years on the date of submission. The articles submitted for publication in this journal should not be submitted elsewhere simultaneously for publication in another journal. These should not carry any copyright material without prior permission of copyright holder. The articles should present a complete picture of the investigation made and should not be split into parts. There is no prescribed limit regarding the number of pages in case of full-length articles. However, the authors are advised to keep the length of their articles from 4 to 10 full printed pages of the journal. The articles should be divided into the sub-sections: ABSTRACT, INTRODUCTION, MATERIALS AND METHODS, RESULTS AND DISCUSSION, CONCLUSIONS, and REFERENCES. Tables and figures should be appended separately at the end.
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