Macro-based collagen quantification and segmentation in picrosirius red-stained heart sections using light microscopy.

IF 2.5 Q3 BIOCHEMICAL RESEARCH METHODS Biology Methods and Protocols Pub Date : 2024-04-27 eCollection Date: 2024-01-01 DOI:10.1093/biomethods/bpae027
Julian Kammerer, Alexandra Cirnu, Tatjana Williams, Melanie Hasselmeier, Mike Nörpel, Ruping Chen, Brenda Gerull
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Abstract

Picrosirius red staining constitutes an important and broadly used tool to visualize collagen and fibrosis in various tissues. Although multiple qualitative and quantitative analysis methods to evaluate fibrosis are available, many require specialized devices and software or lack objectivity and scalability. Here, we aimed to develop a versatile and powerful "QuantSeg" macro in the FIJI image processing software capable of automated, robust, and quick collagen quantification in cardiac tissue from light micrographs. To examine different patterns of fibrosis, an optional segmentation algorithm was implemented. To ensure the method's validity, we quantified the collagen content in a set of wild-type versus plakoglobin-knockout murine hearts exhibiting extensive fibrosis using both the macro and an established, fluorescence microscopy-based method, and compared results. To demonstrate the capabilities of the segmentation feature, rat hearts were examined post-myocardial infarction. We found the QuantSeg macro to robustly detect the differences in fibrosis between knockout and control hearts. In sections with low collagen content, the macro yielded more consistent results than using the fluorescence microscopy-based technique. With its wide range of output parameters, ease of use, cost effectiveness, and objectivity, the QuantSeg macro has the potential to become an established method for analysis of PSR-stained tissue. The novel segmentation feature allows for automated evaluation of different patterns of cardiac fibrosis for the first time.

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使用光学显微镜对皮色红染色的心脏切片进行基于宏观的胶原蛋白定量和分割。
毕赤染色是观察各种组织中胶原蛋白和纤维化的一种重要且广泛使用的工具。虽然有多种定性和定量分析方法可用于评估纤维化,但许多方法都需要专门的设备和软件,或者缺乏客观性和可扩展性。在这里,我们的目标是在 FIJI 图像处理软件中开发一个多功能且功能强大的 "QuantSeg "宏,该宏能够自动、稳健、快速地从光显微照片中量化心脏组织中的胶原蛋白。为了检查不同的纤维化模式,我们采用了一种可选的分割算法。为确保该方法的有效性,我们使用宏法和一种成熟的基于荧光显微镜的方法量化了一组表现出广泛纤维化的野生型和plakoglobin-knockout小鼠心脏中的胶原蛋白含量,并对结果进行了比较。为了证明分割功能的能力,我们对心肌梗塞后的大鼠心脏进行了检查。我们发现,QuantSeg 宏能稳健地检测出基因敲除心脏和对照心脏纤维化的差异。在胶原蛋白含量较低的切片中,宏得到的结果比使用基于荧光显微镜的技术更一致。QuantSeg 宏有广泛的输出参数、易用性、成本效益和客观性,有望成为分析 PSR 染色组织的成熟方法。新颖的分割功能首次实现了对心脏纤维化不同模式的自动评估。
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来源期刊
Biology Methods and Protocols
Biology Methods and Protocols Agricultural and Biological Sciences-Agricultural and Biological Sciences (all)
CiteScore
3.80
自引率
2.80%
发文量
28
审稿时长
19 weeks
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