Identification and Validation of Immune Implication of R-Spondin 1 and an R-Spondin 1-Related Prognostic Signature in Esophagus Cancer

Yuansheng Lin, Xinqi Lou, Shengjun Li, Wei Cai, Tuanjie Che
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Abstract

R-spondin 1 (RSPO1), which encodes a secretory-activating protein, is a promising therapeutic target for various tumors. The aim of this study was to establish a robust RSPO1-related signature specific to esophageal cancer (ESCA). Our comprehensive study involved meticulous analysis of RSPO1 expression in ESCA tissues and validation across ESCA cell lines and clinical samples using The Cancer Genome Atlas (TCGA) and GTEx databases. Using TCGA-ESCA dataset, we employed single-sample gene set enrichment analysis (ssGSEA) to elucidate the complex interaction between RSPO1 expression and the abundance of 22 specific immune cell types infiltrating ESCA. The biological significance of RSPO1 was further elucidated using KEGG, GO, and GSEA, demonstrating its relevance to pivotal tumor and immune pathways. This study culminated in the construction of prognostic nomograms enriched by calibration curves, facilitating the projection of individual survival probabilities at intervals of one, three, and five years. A substantial decrease in RSPO1 expression was observed within ESCA tissues and cell lines compared to their normal esophageal counterparts, and a significant decrease in the proportion of activated dendritic cells was evident within ESCA, accompanied by an augmented presence of macrophages and naive B cells relative to normal tissue. GSEA and KEGG analyses showed that RSPO1 was associated with tumor and immune pathways. Additionally, an independent prognostic risk score based on the RSPO1-related gene signature was developed and validated for patients with ESCA. Finally, RT-qPCR and western blotting were performed to confirm RSPO1 expression in normal and ESCA cell lines and tissue samples. In summary, our investigation underscores the pivotal role of RSPO1 in orchestrating tumor immunity and proposes RSPO1 as a prospective target for immunotherapeutic interventions in ESCA. Furthermore, the intricate profile of the two RSPO1-related genes has emerged as a promising predictive biomarker with notable potential for application in ESCA.

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食管癌中 R-Spondin 1 的免疫影响和 R-Spondin 1 相关预后特征的鉴定与验证
R-spondin 1(RSPO1)编码一种分泌激活蛋白,是治疗各种肿瘤的一个很有前景的靶点。本研究旨在建立食管癌(ESCA)特异的RSPO1相关特征。我们的综合研究包括对食管癌组织中 RSPO1 的表达进行细致分析,并利用癌症基因组图谱(TCGA)和 GTEx 数据库对食管癌细胞系和临床样本进行验证。利用 TCGA-ESCA 数据集,我们采用单样本基因组富集分析(ssGSEA)阐明了 RSPO1 表达与浸润 ESCA 的 22 种特定免疫细胞丰度之间复杂的相互作用。利用KEGG、GO和GSEA进一步阐明了RSPO1的生物学意义,证明了它与关键肿瘤和免疫通路的相关性。这项研究最终通过校准曲线构建了预后提名图,有助于预测个体在一年、三年和五年间隔期的生存概率。与正常食管组织和细胞系相比,ESCA 组织和细胞系中的 RSPO1 表达量大幅下降;与正常组织相比,ESCA 中活化树突状细胞的比例明显降低,同时巨噬细胞和幼稚 B 细胞的数量增加。GSEA和KEGG分析表明,RSPO1与肿瘤和免疫通路相关。此外,根据 RSPO1 相关基因特征为 ESCA 患者制定并验证了独立的预后风险评分。最后,我们通过 RT-qPCR 和 Western 印迹技术确认了 RSPO1 在正常和 ESCA 细胞系及组织样本中的表达。总之,我们的研究强调了 RSPO1 在协调肿瘤免疫中的关键作用,并建议将 RSPO1 作为对 ESCA 进行免疫治疗干预的前瞻性靶点。此外,两个 RSPO1 相关基因错综复杂的特征已成为一种有前途的预测性生物标志物,在 ESCA 中具有显著的应用潜力。
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Comparative and Functional Genomics
Comparative and Functional Genomics 生物-生化与分子生物学
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