Inequality relations for NMR-based polymer homoblock analysis and extended application: Reanalysis of historical data on alginates, chitosans, homogalacturonans, and galactomannans

IF 2.4 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Carbohydrate Research Pub Date : 2024-06-11 DOI:10.1016/j.carres.2024.109189
Xiaohui Xing , Kanglin Xing , Yves S.Y. Hsieh , D. Wade Abbott
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Abstract

There has been a long-standing bottleneck in the quantitative analysis of the frequencies of homoblock polyads beyond triads using 1H and 13C NMR for linear polysaccharides, primarily because monosaccharides within a long homoblock share similar chemical environments due to identical neighboring units, resulting in indistinct NMR peaks. In this study, through rigorous mathematical induction, inequality relations were established that enabled the calculation of frequency ranges of homoblock polyads from historically reported NMR-derived frequency values of diads and/or triads of alginates, chitosans, homogalacturonans, and galactomannans. The calculated homoblock frequency ranges were then applied to evaluate three chain growth statistical models, including the Bernoulli chain, first-order Markov chain, and second-order Markov chain, for predicting homoblock frequencies in these polysaccharides. Furthermore, based on the mathematically derived inequality relations, a novel 2D array was constructed, enabling the graphical visualization of homoblock features in polysaccharides. It was demonstrated, as a proof of concept, that the novel 2D array, along with a 1D code generated from it, could serve as an effective feature engineering tool for polymer classification using machine learning algorithms.

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基于核磁共振的聚合物同体分析的不等式关系及扩展应用:重新分析有关藻酸盐、壳聚糖、同型半乳糖醛酸和半乳甘露聚糖的历史数据
长期以来,使用线性多糖的 1H 和 13C NMR 定量分析三聚体以外的同体多聚体频率一直存在瓶颈,主要原因是长同体多聚体中的单糖因邻近单元相同而共享相似的化学环境,导致 NMR 峰不清晰。在本研究中,通过严格的数学归纳,建立了不等式关系,从而能够根据历史上报告的藻酸盐、壳聚糖、同型半乳糖醛酸和半乳甘露聚糖的二元和/或三元的 NMR 频率值计算出同组多糖的频率范围。然后将计算出的同链频率范围用于评估三种链增长统计模型,包括伯努利链、一阶马尔可夫链和二阶马尔可夫链,以预测这些多糖中的同链频率。此外,根据数学推导出的不等式关系,还构建了一种新型的二维阵列,使多糖中的同阻特征图形化。作为概念证明,新型二维阵列以及由此生成的一维代码可作为有效的特征工程工具,利用机器学习算法进行聚合物分类。
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来源期刊
Carbohydrate Research
Carbohydrate Research 化学-生化与分子生物学
CiteScore
5.00
自引率
3.20%
发文量
183
审稿时长
3.6 weeks
期刊介绍: Carbohydrate Research publishes reports of original research in the following areas of carbohydrate science: action of enzymes, analytical chemistry, biochemistry (biosynthesis, degradation, structural and functional biochemistry, conformation, molecular recognition, enzyme mechanisms, carbohydrate-processing enzymes, including glycosidases and glycosyltransferases), chemical synthesis, isolation of natural products, physicochemical studies, reactions and their mechanisms, the study of structures and stereochemistry, and technological aspects. Papers on polysaccharides should have a "molecular" component; that is a paper on new or modified polysaccharides should include structural information and characterization in addition to the usual studies of rheological properties and the like. A paper on a new, naturally occurring polysaccharide should include structural information, defining monosaccharide components and linkage sequence. Papers devoted wholly or partly to X-ray crystallographic studies, or to computational aspects (molecular mechanics or molecular orbital calculations, simulations via molecular dynamics), will be considered if they meet certain criteria. For computational papers the requirements are that the methods used be specified in sufficient detail to permit replication of the results, and that the conclusions be shown to have relevance to experimental observations - the authors'' own data or data from the literature. Specific directions for the presentation of X-ray data are given below under Results and "discussion".
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