Tunable intracellular transport on converging microtubule morphologies.

IF 2.4 Q3 BIOPHYSICS Biophysical reports Pub Date : 2024-09-11 Epub Date: 2024-07-10 DOI:10.1016/j.bpr.2024.100171
Niranjan Sarpangala, Brooke Randell, Ajay Gopinathan, Oleg Kogan
{"title":"Tunable intracellular transport on converging microtubule morphologies.","authors":"Niranjan Sarpangala, Brooke Randell, Ajay Gopinathan, Oleg Kogan","doi":"10.1016/j.bpr.2024.100171","DOIUrl":null,"url":null,"abstract":"<p><p>A common type of cytoskeletal morphology involves multiple microtubules converging with their minus ends at the microtubule organizing center (MTOC). The cargo-motor complex will experience ballistic transport when bound to microtubules or diffusive transport when unbound. This machinery allows for sequestering and subsequent dispersal of dynein-transported cargo. The general principles governing dynamics, efficiency, and tunability of such transport in the MTOC vicinity are not fully understood. To address this, we develop a one-dimensional model that includes advective transport toward an attractor (such as the MTOC) and diffusive transport that allows particles to reach absorbing boundaries (such as cellular membranes). We calculated the mean first passage time (MFPT) for cargo to reach the boundaries as a measure of the effectiveness of sequestering (large MFPT) and diffusive dispersal (low MFPT). We show that the MFPT experiences a dramatic growth, transitioning from a low to high MFPT regime (dispersal to sequestering) over a window of cargo on-/off-rates that is close to in vivo values. Furthermore, increasing either the on-rate (attachment) or off-rate (detachment) can result in optimal dispersal when the attractor is placed asymmetrically. Finally, we also describe a regime of rare events where the MFPT scales exponentially with motor velocity and the escape location becomes exponentially sensitive to the attractor positioning. Our results suggest that structures such as the MTOC allow for the sensitive control of the spatial and temporal features of transport and corresponding function under physiological conditions.</p>","PeriodicalId":72402,"journal":{"name":"Biophysical reports","volume":null,"pages":null},"PeriodicalIF":2.4000,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11345624/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biophysical reports","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1016/j.bpr.2024.100171","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/7/10 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"BIOPHYSICS","Score":null,"Total":0}
引用次数: 0

Abstract

A common type of cytoskeletal morphology involves multiple microtubules converging with their minus ends at the microtubule organizing center (MTOC). The cargo-motor complex will experience ballistic transport when bound to microtubules or diffusive transport when unbound. This machinery allows for sequestering and subsequent dispersal of dynein-transported cargo. The general principles governing dynamics, efficiency, and tunability of such transport in the MTOC vicinity are not fully understood. To address this, we develop a one-dimensional model that includes advective transport toward an attractor (such as the MTOC) and diffusive transport that allows particles to reach absorbing boundaries (such as cellular membranes). We calculated the mean first passage time (MFPT) for cargo to reach the boundaries as a measure of the effectiveness of sequestering (large MFPT) and diffusive dispersal (low MFPT). We show that the MFPT experiences a dramatic growth, transitioning from a low to high MFPT regime (dispersal to sequestering) over a window of cargo on-/off-rates that is close to in vivo values. Furthermore, increasing either the on-rate (attachment) or off-rate (detachment) can result in optimal dispersal when the attractor is placed asymmetrically. Finally, we also describe a regime of rare events where the MFPT scales exponentially with motor velocity and the escape location becomes exponentially sensitive to the attractor positioning. Our results suggest that structures such as the MTOC allow for the sensitive control of the spatial and temporal features of transport and corresponding function under physiological conditions.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
汇聚微管形态上的可调细胞内运输。
一种常见的细胞骨架形态是多条微管的负端汇聚在微管组织中心(MTOC)。货物-运动复合体与微管结合时会进行弹道运输,未与微管结合时则进行扩散运输。这种机械装置可以将动力蛋白运输的货物固定下来,然后进行分散。目前还不完全清楚在 MTOC 附近进行这种运输的动力学、效率和可调性的一般原理。为了解决这个问题,我们建立了一个一维模型,其中包括向吸引子(如 MTOC)的平流运输,以及允许颗粒到达吸收边界(如细胞膜)的扩散运输。我们计算了货物到达边界的平均首次通过时间(MFPT),以此来衡量封存(MFPT 大)和扩散(MFPT 小)的有效性。我们的研究表明,在接近体内值的货物开-关速率窗口内,MFPT经历了从低到高MFPT机制(扩散到封存)的急剧增长。此外,当吸引子被非对称放置时,增加开(附着)或关(分离)率都能带来最佳的分散效果。最后,我们还描述了一种罕见事件机制,在这种机制中,MFPT 与运动速度成指数关系,而逃逸位置对吸引子定位成指数关系。我们的研究结果表明,在生理条件下,MTOC 等结构可以灵敏地控制运输的空间和时间特征以及相应的功能。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Biophysical reports
Biophysical reports Biophysics
CiteScore
2.40
自引率
0.00%
发文量
0
审稿时长
75 days
期刊最新文献
Development of a digital amplifier system for cut-open oocyte electrophysiology. Structural studies of the human α1 glycine receptor via site-specific chemical cross-linking coupled with mass spectrometry. Expression level of cardiac ryanodine receptors dictates properties of Ca2+-induced Ca2+ release. Nonlinear classifiers for wet-neuromorphic computing using gene regulatory neural network. Magnetic field platform for experiments on well-mixed and spatially structured microbial populations.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1