Molecular characterization and frequency of human pegivirus type 1 (HPgV-1) in kidney transplant recipients from Central-West Brazil.

IF 2.1 4区 生物学 Q3 MICROBIOLOGY Brazilian Journal of Microbiology Pub Date : 2024-12-01 Epub Date: 2024-08-21 DOI:10.1007/s42770-024-01490-z
Fábio Gonçalves da Silva, Drielly Rodrigues Moura, Pâmela Maria de Oliveira, Tatyane de Souza Cardoso Quintão, Évelin Mota Cassemiro, Gabriel Montenegro de Campos, Anielly Sarana da Silva, Rafael Dos Santos Bezerra, Lorena Aparecida Gonçalves de Noronha, Walter Massa Ramalho, Wildo Navegantes de Araújo, Alex Leite Pereira, Svetoslav Nanev Slavov, Rodrigo Haddad
{"title":"Molecular characterization and frequency of human pegivirus type 1 (HPgV-1) in kidney transplant recipients from Central-West Brazil.","authors":"Fábio Gonçalves da Silva, Drielly Rodrigues Moura, Pâmela Maria de Oliveira, Tatyane de Souza Cardoso Quintão, Évelin Mota Cassemiro, Gabriel Montenegro de Campos, Anielly Sarana da Silva, Rafael Dos Santos Bezerra, Lorena Aparecida Gonçalves de Noronha, Walter Massa Ramalho, Wildo Navegantes de Araújo, Alex Leite Pereira, Svetoslav Nanev Slavov, Rodrigo Haddad","doi":"10.1007/s42770-024-01490-z","DOIUrl":null,"url":null,"abstract":"<p><p>Human Pegivirus Type 1 (HPgV-1), a ubiquitous commensal virus, has been recently suggested as a marker of immunologic function. There is scarce data for the presence, genotypes, and molecular characteristics of HPgV-1 among kidney transplant recipients. Therefore, the objective of this study was to examine the prevalence and the molecular characteristics (cycle threshold, genotypes) of this viral infection among kidney transplant recipients from the Brasília, Federal District of Brazil. HPgV-1 RNA detection in the plasma was assessed by RT-qPCR. Positive samples were submitted to sequencing and phylogenetic analysis of the 5´-UTR portion of the viral genome. The estimated HPgV-1 prevalence among renal-transplant recipients was 20%. The performed phylogenetic inference revealed that the most frequent genotype among these patients was HPgV-1 genotype 2 (78.9%) presented by its two subgenotypes (2 A and 2B), followed by genotypes 1 and 3 (10.5% each). This study presents new data about the HPgV-1 circulation and molecular characteristics among kidney transplant recipients from the Federal District of Brazil. Further work is fundamental to examine the effect of HPgV-1 among patients with immunological suppression, including kidney transplant recipients.</p>","PeriodicalId":9090,"journal":{"name":"Brazilian Journal of Microbiology","volume":" ","pages":"3279-3286"},"PeriodicalIF":2.1000,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11711997/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Brazilian Journal of Microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s42770-024-01490-z","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/8/21 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Human Pegivirus Type 1 (HPgV-1), a ubiquitous commensal virus, has been recently suggested as a marker of immunologic function. There is scarce data for the presence, genotypes, and molecular characteristics of HPgV-1 among kidney transplant recipients. Therefore, the objective of this study was to examine the prevalence and the molecular characteristics (cycle threshold, genotypes) of this viral infection among kidney transplant recipients from the Brasília, Federal District of Brazil. HPgV-1 RNA detection in the plasma was assessed by RT-qPCR. Positive samples were submitted to sequencing and phylogenetic analysis of the 5´-UTR portion of the viral genome. The estimated HPgV-1 prevalence among renal-transplant recipients was 20%. The performed phylogenetic inference revealed that the most frequent genotype among these patients was HPgV-1 genotype 2 (78.9%) presented by its two subgenotypes (2 A and 2B), followed by genotypes 1 and 3 (10.5% each). This study presents new data about the HPgV-1 circulation and molecular characteristics among kidney transplant recipients from the Federal District of Brazil. Further work is fundamental to examine the effect of HPgV-1 among patients with immunological suppression, including kidney transplant recipients.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
巴西中西部肾移植受者中人类 1 型佩吉病毒 (HPgV-1) 的分子特征和感染频率。
人类佩吉病毒 1 型(HPgV-1)是一种无处不在的共生病毒,最近被认为是免疫功能的标志物。有关肾移植受者中 HPgV-1 的存在、基因型和分子特征的数据很少。因此,本研究的目的是检测巴西联邦区巴西利亚的肾移植受者中这种病毒感染的流行率和分子特征(周期阈值、基因型)。血浆中 HPgV-1 RNA 的检测采用 RT-qPCR 方法进行评估。对阳性样本进行了病毒基因组 5´-UTR 部分的测序和系统发育分析。据估计,肾移植受者的 HPgV-1 感染率为 20%。系统发育推断显示,这些患者中最常见的基因型是 HPgV-1 基因型 2(78.9%),由其两个亚基因型(2 A 和 2B)组成,其次是基因型 1 和 3(各占 10.5%)。这项研究提供了有关巴西联邦区肾移植受者中 HPgV-1 循环和分子特征的新数据。进一步研究 HPgV-1 对免疫抑制患者(包括肾移植受者)的影响至关重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Brazilian Journal of Microbiology
Brazilian Journal of Microbiology 生物-微生物学
CiteScore
4.10
自引率
4.50%
发文量
216
审稿时长
1.0 months
期刊介绍: The Brazilian Journal of Microbiology is an international peer reviewed journal that covers a wide-range of research on fundamental and applied aspects of microbiology. The journal considers for publication original research articles, short communications, reviews, and letters to the editor, that may be submitted to the following sections: Biotechnology and Industrial Microbiology, Food Microbiology, Bacterial and Fungal Pathogenesis, Clinical Microbiology, Environmental Microbiology, Veterinary Microbiology, Fungal and Bacterial Physiology, Bacterial, Fungal and Virus Molecular Biology, Education in Microbiology. For more details on each section, please check out the instructions for authors. The journal is the official publication of the Brazilian Society of Microbiology and currently publishes 4 issues per year.
期刊最新文献
Chemical composition, antibacterial and antioxidant activities of Piper betle and Anethum graveolens essential oils against Methicillin-resistant Staphylococcus aureus clinical isolates. Biochemical features and biotechnological potential of a proteolytic extract from a psychrophilic Antarctic bacterium. Detection and characterization of pathogenic Bacillus haynesii from Tribulus terrestris extract: ways to reduce its levels. Exploration of endophytic and rhizospheric bacteria of invasive plant Xanthium strumarium L. reveals their potential in plant growth promotion and bacterial wilt suppression. Biofilm formation by the plant growth promoting bacterium Bacillus cereus (EB-40).
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1