Cytochrome P450 monooxygenase systems: Diversity and plasticity for adaptive stress response

IF 3.2 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Progress in Biophysics & Molecular Biology Pub Date : 2024-09-06 DOI:10.1016/j.pbiomolbio.2024.09.003
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Abstract

Superfamily of cytochromes P450 (CYPs) is composed of heme-thiolate-containing monooxygenase enzymes, which play crucial roles in the biosynthesis, bioactivation, and detoxification of a variety of organic compounds, both endogenic and exogenic. Majority of CYP monooxygenase systems are multi-component and contain various redox partners, cofactors and auxiliary proteins, which contribute to their diversity in both prokaryotes and eukaryotes. Recent progress in bioinformatics and computational biology approaches make it possible to undertake whole-genome and phylogenetic analyses of CYPomes of a variety of organisms. Considerable variations in sequences within and between CYP families and high similarity in secondary and tertiary structures between all CYPs along with dramatic conformational changes in secondary structure elements of a substrate binding site during catalysis have been reported. This provides structural plasticity and substrate promiscuity, which underlie functional diversity of CYPs. Gene duplication and mutation events underlie CYP evolutionary diversity and emergence of novel selectable functions, which provide the involvement of CYPs in high adaptability to changing environmental conditions and dietary restrictions. In our review, we discuss the recent advancements and challenges in the elucidating the evolutionary origin and mechanisms underlying the CYP monooxygenase system diversity and plasticity. Our review is in the view of hypothesis that diversity of CYP monooxygenase systems is translated into the broad metabolic profiles, and this has been acquired during the long evolutionary time to provide structural plasticity leading to high adaptative capabilities to environmental stress conditions.

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细胞色素 P450 单氧化酶系统:适应性应激反应的多样性和可塑性。
细胞色素 P450 超家族(CYPs)由含血红素硫酸盐的单加氧酶组成,在多种内外源有机化合物的生物合成、生物活化和解毒过程中发挥着至关重要的作用。大多数 CYP 单加氧酶系统都是多组分的,包含各种氧化还原伙伴、辅助因子和辅助蛋白,这也是它们在原核生物和真核生物中具有多样性的原因。生物信息学和计算生物学方法的最新进展使得对多种生物的 CYPomes 进行全基因组和系统发育分析成为可能。据报道,CYP 家族内部和家族之间的序列有相当大的差异,所有 CYP 之间的二级和三级结构具有高度相似性,底物结合位点的二级结构元素在催化过程中会发生巨大的构象变化。这提供了结构可塑性和底物杂交性,是 CYPs 功能多样性的基础。基因复制和突变事件是 CYP 进化多样性和新型可选择功能出现的基础,这使得 CYPs 能够很好地适应不断变化的环境条件和饮食限制。在这篇综述中,我们讨论了在阐明 CYP 单加氧酶系统多样性和可塑性的进化起源和机制方面的最新进展和挑战。我们的综述认为,CYP 单加氧酶系统的多样性可转化为广泛的代谢特征,这是在漫长的进化过程中获得的,可提供结构上的可塑性,导致对环境压力条件的高度适应能力。
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来源期刊
Progress in Biophysics & Molecular Biology
Progress in Biophysics & Molecular Biology 生物-生化与分子生物学
CiteScore
8.60
自引率
7.90%
发文量
85
审稿时长
85 days
期刊介绍: Progress in Biophysics & Molecular Biology is an international review journal and covers the ground between the physical and biological sciences since its launch in 1950. It indicates to the physicist the great variety of unsolved problems awaiting attention in biology and medicine. The biologist and biochemist will find that this journal presents new and stimulating ideas and novel approaches to studying and influencing structural and functional properties of the living organism. This journal will be of particular interest to biophysicists, biologists, biochemists, cell physiologists, systems biologists, and molecular biologists.
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