A reference genome, mitochondrial genome and associated transcriptomes for the critically endangered swift parrot ( Lathamus discolor).

Q2 Pharmacology, Toxicology and Pharmaceutics F1000Research Pub Date : 2024-08-27 eCollection Date: 2024-01-01 DOI:10.12688/f1000research.144352.2
Luke W Silver, Dejan Stojanovic, Katherine A Farquharson, Lauren Alexander, Emma Peel, Katherine Belov, Carolyn J Hogg
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Abstract

The swift parrot ( Lathamus discolor) is a Critically Endangered migratory parrot that breeds in Tasmania and winters on the Australian mainland. Here we provide a reference genome assembly for the swift parrot. We sequence PacBio HiFi reads to create a high-quality reference assembly and identify a complete mitochondrial sequence. We also generate a reference transcriptome from five organs to inform genome annotation. The genome was 1.24 Gb in length and consisted of 847 contigs with a contig N50 of 18.97 Gb and L50 of 20 contigs. This study provides an annotated reference assembly and transcriptomic resources for the swift parrot to assist in future conservation genomic research.

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极度濒危燕鹦鹉(Lathamus discolor)的参考基因组、线粒体基因组和相关转录组。
雨燕(Lathamus discolor)是一种极度濒危的候鸟,在塔斯马尼亚繁殖,在澳大利亚大陆越冬。在此,我们提供了雨燕的参考基因组组装。我们对 PacBio HiFi 读数进行测序,以创建高质量的参考组,并确定完整的线粒体序列。我们还从五个器官中生成了参考转录组,为基因组注释提供信息。基因组长度为 1.24 Gb,由 847 个等位基因组成,等位基因 N50 为 18.97 Gb,L50 为 20 个等位基因。这项研究为雨燕提供了一个注释参考组和转录组资源,有助于未来的保护基因组研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
F1000Research
F1000Research Pharmacology, Toxicology and Pharmaceutics-Pharmacology, Toxicology and Pharmaceutics (all)
CiteScore
5.00
自引率
0.00%
发文量
1646
审稿时长
1 weeks
期刊介绍: F1000Research publishes articles and other research outputs reporting basic scientific, scholarly, translational and clinical research across the physical and life sciences, engineering, medicine, social sciences and humanities. F1000Research is a scholarly publication platform set up for the scientific, scholarly and medical research community; each article has at least one author who is a qualified researcher, scholar or clinician actively working in their speciality and who has made a key contribution to the article. Articles must be original (not duplications). All research is suitable irrespective of the perceived level of interest or novelty; we welcome confirmatory and negative results, as well as null studies. F1000Research publishes different type of research, including clinical trials, systematic reviews, software tools, method articles, and many others. Reviews and Opinion articles providing a balanced and comprehensive overview of the latest discoveries in a particular field, or presenting a personal perspective on recent developments, are also welcome. See the full list of article types we accept for more information.
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