Text Mining and Computational Chemistry Reveal Trends in Applications of Laser Desorption/Ionization Techniques to Small Molecules

IF 3.1 2区 化学 Q2 BIOCHEMICAL RESEARCH METHODS Journal of the American Society for Mass Spectrometry Pub Date : 2024-09-23 DOI:10.1021/jasms.4c0029310.1021/jasms.4c00293
Nina P. Bergman, Jonas Bergquist, Mikael Hedeland and Magnus Palmblad*, 
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Abstract

Continued development of laser desorption/ionization (LDI) since its inception in the 1960s has produced an explosion of soft ionization techniques, where ionization is assisted by the physical or chemical properties of a structure or matrix. While many of these techniques have primarily been used to ionize large biomolecules, including proteins, some have recently seen increasing applications to small molecules such as pharmaceuticals. Small molecules pose particular challenges for LDI techniques, including interference from the matrix or support in the low mass range. To investigate trends in the application of soft LDI techniques to small molecules, we combined text mining and computational chemistry, looking specifically at matrix substances, analyte properties, and the research domain. In addition to making visible the history of LDI techniques, the results may inform the choice of method and suggest new avenues of method development. All software and collected data are freely available on GitHub (https://github.com/ReinV/SCOPE), VOSviewer (https://www.vosviewer.com), and OSF (https://osf.io/zkmua/).

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文本挖掘和计算化学揭示小分子激光解吸/电离技术的应用趋势
自 20 世纪 60 年代激光解吸/电离技术(LDI)问世以来,该技术不断发展,产生了大量软电离技术,这些技术利用结构或基质的物理或化学特性辅助电离。虽然其中许多技术主要用于电离包括蛋白质在内的大型生物分子,但最近一些技术也越来越多地应用于药物等小分子方面。小分子对 LDI 技术提出了特殊的挑战,包括在低质量范围内基质或支持物的干扰。为了研究软 LDI 技术在小分子中的应用趋势,我们结合了文本挖掘和计算化学,具体研究了基质物质、分析物特性和研究领域。除了揭示 LDI 技术的历史,研究结果还可为方法选择提供参考,并为方法开发提供新途径。所有软件和收集的数据均可在 GitHub (https://github.com/ReinV/SCOPE)、VOSviewer (https://www.vosviewer.com) 和 OSF (https://osf.io/zkmua/) 上免费获取。
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来源期刊
CiteScore
5.50
自引率
9.40%
发文量
257
审稿时长
1 months
期刊介绍: The Journal of the American Society for Mass Spectrometry presents research papers covering all aspects of mass spectrometry, incorporating coverage of fields of scientific inquiry in which mass spectrometry can play a role. Comprehensive in scope, the journal publishes papers on both fundamentals and applications of mass spectrometry. Fundamental subjects include instrumentation principles, design, and demonstration, structures and chemical properties of gas-phase ions, studies of thermodynamic properties, ion spectroscopy, chemical kinetics, mechanisms of ionization, theories of ion fragmentation, cluster ions, and potential energy surfaces. In addition to full papers, the journal offers Communications, Application Notes, and Accounts and Perspectives
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