A Comprehensive Bioinformatic Analysis Identifies a Tumor Suppressor Landscape of the MEG3 lncRNA in Breast Cancer.

IF 0.6 Q4 ONCOLOGY Indian Journal of Surgical Oncology Pub Date : 2024-12-01 Epub Date: 2024-06-27 DOI:10.1007/s13193-024-01992-0
Alireza Ahmadi, Abedeh Rezaei, Mohammad Khalaj-Kondori, Mina Khajehdehi
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Abstract

Breast cancer (BC) is the leading cause of cancer mortality in women and a major risk to world health. Therefore, effective strategies are required for prompt diagnosis and treatment. Nowadays, non-coding RNAs (ncRNAs), particularly long ncRNAs (lncRNAs), have assumed a significant role in the prognosis and diagnosis of diseases, including cancer. In the present study, surveying the bioinformatic tools, including the lncRNADisease v2.0, OncoDB, InteractiVenn, GEPIA, RAID, COXPRESdb, DAVID v6.8, GEO2R, and LncSEA, we proposed the Maternally Expressed Gene (MEG3) as a potential biomarker in BC. This lncRNA significantly downregulates in BC and is associated with tumor size, metastasis, and pathological stage. MEG3 expression is downregulated in several types of primary human cancers and tumor cell lines, which raises the possibility that it could act as a tumor suppressor. The results suggest that MEG3 may play a crucial role in fundamental pathways, including apoptosis, and interact with essential genes and proteins such as P53. It may also be associated with the prognosis, proliferation, migration, invasion, and metastasis of BC.

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综合生物信息学分析确定了乳腺癌中 MEG3 lncRNA 的肿瘤抑制因子图谱
乳腺癌(BC)是女性癌症死亡的主要原因,也是世界健康的主要风险。因此,及时诊断和治疗需要有效的策略。如今,非编码 RNA(ncRNA),尤其是长 ncRNA(lncRNA),在包括癌症在内的疾病预后和诊断中发挥着重要作用。在本研究中,通过对生物信息学工具(包括 lncRNADisease v2.0、OncoDB、InteractiVenn、GEPIA、RAID、COXPRESdb、DAVID v6.8、GEO2R 和 LncSEA)的研究,我们提出将母系表达基因(MEG3)作为 BC 潜在的生物标志物。该lncRNA在BC中明显下调,并与肿瘤大小、转移和病理分期相关。MEG3在多种类型的原发性人类癌症和肿瘤细胞系中表达下调,这使它有可能充当肿瘤抑制因子。研究结果表明,MEG3 可能在包括细胞凋亡在内的基本通路中发挥关键作用,并与 P53 等重要基因和蛋白相互作用。它还可能与良性前列腺癌的预后、增殖、迁移、侵袭和转移有关。
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来源期刊
CiteScore
1.10
自引率
0.00%
发文量
190
期刊介绍: The Indian Journal of Surgical Oncology aims to encourage and promote clinical and research activities pertaining to Surgical Oncology. It also aims to bring in the concept of multidisciplinary team approach in management of various cancers. The Journal would publish original article, point of technique, review article, case report, letter to editor, profiles of eminent teachers, surgeons and instititions - a short (up to 500 words) of the Cancer Institutions, departments, and oncologist, who founded new departments.
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