{"title":"ScoreREM: A user-friendly Matlab-GUI for rapid eye movement (REM) sleep microstructure (Phasic/Tonic) annotation and quantification","authors":"Kiran K G Ravindran , Derk-Jan Dijk","doi":"10.1016/j.softx.2024.101988","DOIUrl":null,"url":null,"abstract":"<div><div>Rapid eye movement (REM) sleep plays a crucial role in brain functions such as memory consolidation and mood regulation. Alterations in REM sleep and REM sleep behaviour disorders are early biomarkers of neurodegenerative disorders. The microstructure of REM sleep consists of two states: phasic and tonic REM sleep. Quantification of phasic and tonic REM sleep is increasingly pursued. Here we introduce, ScoreREM, an open-source user-friendly MATLAB graphical user interface (GUI) designed for rapid annotation and quantification of Phasic and Tonic REM sleep. Due to its intuitive functionalities and vast array of potential application areas, ScoreREM will serve as an indispensable tool for rapid and accurate REM microstructure quantification in clinical studies.</div></div>","PeriodicalId":21905,"journal":{"name":"SoftwareX","volume":"29 ","pages":"Article 101988"},"PeriodicalIF":2.4000,"publicationDate":"2024-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"SoftwareX","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352711024003583","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, SOFTWARE ENGINEERING","Score":null,"Total":0}
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Abstract
Rapid eye movement (REM) sleep plays a crucial role in brain functions such as memory consolidation and mood regulation. Alterations in REM sleep and REM sleep behaviour disorders are early biomarkers of neurodegenerative disorders. The microstructure of REM sleep consists of two states: phasic and tonic REM sleep. Quantification of phasic and tonic REM sleep is increasingly pursued. Here we introduce, ScoreREM, an open-source user-friendly MATLAB graphical user interface (GUI) designed for rapid annotation and quantification of Phasic and Tonic REM sleep. Due to its intuitive functionalities and vast array of potential application areas, ScoreREM will serve as an indispensable tool for rapid and accurate REM microstructure quantification in clinical studies.
期刊介绍：
SoftwareX aims to acknowledge the impact of software on today''s research practice, and on new scientific discoveries in almost all research domains. SoftwareX also aims to stress the importance of the software developers who are, in part, responsible for this impact. To this end, SoftwareX aims to support publication of research software in such a way that: The software is given a stamp of scientific relevance, and provided with a peer-reviewed recognition of scientific impact; The software developers are given the credits they deserve; The software is citable, allowing traditional metrics of scientific excellence to apply; The academic career paths of software developers are supported rather than hindered; The software is publicly available for inspection, validation, and re-use. Above all, SoftwareX aims to inform researchers about software applications, tools and libraries with a (proven) potential to impact the process of scientific discovery in various domains. The journal is multidisciplinary and accepts submissions from within and across subject domains such as those represented within the broad thematic areas below: Mathematical and Physical Sciences; Environmental Sciences; Medical and Biological Sciences; Humanities, Arts and Social Sciences. Originating from these broad thematic areas, the journal also welcomes submissions of software that works in cross cutting thematic areas, such as citizen science, cybersecurity, digital economy, energy, global resource stewardship, health and wellbeing, etcetera. SoftwareX specifically aims to accept submissions representing domain-independent software that may impact more than one research domain.
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