The first complete mitochondrial genome of sesame (Sesamum indicum L.).

IF 1.7 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Genetics and Molecular Biology Pub Date : 2024-12-02 eCollection Date: 2024-01-01 DOI:10.1590/1678-4685-GMB-2024-0064
Mingcheng Wang, Rui Li, Xuchen Yang
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Abstract

Sesame (Sesamum indicum L.), an important oilseed crop, has garnered considerable interest. The nuclear and chloroplast genomes of sesame have been extensively applied to sesame genetics and genomics research. The mitochondrial (mt) genome of sesame, however, has not been sequenced and annotated. In order to solve this issue, we reconstructed the first mt genome of sesame using third-generation sequencing data. The sesame mt genome was 724,998 bp in size and had 22 circular chromosomes. A total of 66 genes were annotated, including 37 protein-coding genes, 26 transfer RNAs, and three ribosomal RNAs. We investigated the codon usage patterns, simple sequence repeats, long tandem repeats, and dispersed repeats of the sesame mt genome. Furthermore, we investigated the DNA transfer from chloroplast to mitochondrion and compared the sesame mt genome to two other Lamiales mt genomes. Given the economic importance of this crop, our presented sesame mt genome is a valuable genomic resource and will allow for more comprehensive studies on sesame and related species.

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芝麻(Sesamum indicum L.)的首个完整线粒体基因组。
芝麻(Sesamum indicum L.)是一种重要的油料作物,引起了人们的极大兴趣。芝麻的核基因组和叶绿体基因组已广泛应用于芝麻遗传学和基因组学研究。然而,芝麻的线粒体(mt)基因组尚未测序和注释。为了解决这一问题,我们利用第三代测序数据重建了芝麻的第一个mt基因组。芝麻mt基因组大小为724,998 bp,有22条圆形染色体。共注释了66个基因,其中蛋白编码基因37个,转移rna 26个,核糖体rna 3个。我们研究了芝麻mt基因组的密码子使用模式、简单序列重复、长串联重复和分散重复。此外,我们研究了DNA从叶绿体到线粒体的转移,并将芝麻mt基因组与其他两个Lamiales mt基因组进行了比较。鉴于这种作物的经济重要性,我们提出的芝麻mt基因组是一个有价值的基因组资源,将允许对芝麻和相关物种进行更全面的研究。
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来源期刊
Genetics and Molecular Biology
Genetics and Molecular Biology 生物-生化与分子生物学
CiteScore
4.20
自引率
4.80%
发文量
111
审稿时长
3 months
期刊介绍: Genetics and Molecular Biology (formerly named Revista Brasileira de Genética/Brazilian Journal of Genetics - ISSN 0100-8455) is published by the Sociedade Brasileira de Genética (Brazilian Society of Genetics). The Journal considers contributions that present the results of original research in genetics, evolution and related scientific disciplines. Manuscripts presenting methods and applications only, without an analysis of genetic data, will not be considered.
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