Sequence-Dependent Liquid Crystalline Ordering of Gapped DNA

IF 5.1 Q1 POLYMER SCIENCE ACS Macro Letters Pub Date : 2025-01-22 DOI:10.1021/acsmacrolett.4c00788
Sineth G. Kodikara, James T. Gleeson, Antal Jakli, Samuel Sprunt, Hamza Balci
{"title":"Sequence-Dependent Liquid Crystalline Ordering of Gapped DNA","authors":"Sineth G. Kodikara, James T. Gleeson, Antal Jakli, Samuel Sprunt, Hamza Balci","doi":"10.1021/acsmacrolett.4c00788","DOIUrl":null,"url":null,"abstract":"We investigate the impact of poly adenine (poly-A) sequences on the type and stability of liquid crystalline (LC) phases formed by concentrated solutions of gapped DNA (two duplex arms bridged by a flexible single strand) using synchrotron small-angle X-ray scattering and polarizing optical microscopy. While samples with mixed sequence form layered (smectic) phases, poly-A samples demonstrate a columnar phase at lower temperatures (5–35 °C), not previously observed in GDNA samples, and a smectic-B phase of exceptional stability at higher temperatures (35–65 °C). We present a model that connects the formation of these LC phases with the unique characteristics of poly-A sequences, which manifest in various biological contexts, including DNA condensation and nucleosome formation.","PeriodicalId":18,"journal":{"name":"ACS Macro Letters","volume":"18 1","pages":""},"PeriodicalIF":5.1000,"publicationDate":"2025-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Macro Letters","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acsmacrolett.4c00788","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"POLYMER SCIENCE","Score":null,"Total":0}
引用次数: 0

Abstract

We investigate the impact of poly adenine (poly-A) sequences on the type and stability of liquid crystalline (LC) phases formed by concentrated solutions of gapped DNA (two duplex arms bridged by a flexible single strand) using synchrotron small-angle X-ray scattering and polarizing optical microscopy. While samples with mixed sequence form layered (smectic) phases, poly-A samples demonstrate a columnar phase at lower temperatures (5–35 °C), not previously observed in GDNA samples, and a smectic-B phase of exceptional stability at higher temperatures (35–65 °C). We present a model that connects the formation of these LC phases with the unique characteristics of poly-A sequences, which manifest in various biological contexts, including DNA condensation and nucleosome formation.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
间隙DNA的序列依赖液晶排序
我们利用同步小角度x射线散射和偏振光学显微镜研究了聚腺嘌呤(poly- a)序列对由间隙DNA(由柔性单链桥联的两条双臂)的浓缩溶液形成的液晶(LC)相的类型和稳定性的影响。具有混合序列的样品形成层状(近晶)相,poly-A样品在较低温度(5-35℃)下表现为柱状相,这在GDNA样品中以前没有观察到,并且在较高温度(35-65℃)下表现为异常稳定的近晶- b相。我们提出了一个模型,将这些LC相的形成与poly-A序列的独特特征联系起来,这些特征在各种生物环境中表现出来,包括DNA凝聚和核小体的形成。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
CiteScore
10.40
自引率
3.40%
发文量
209
审稿时长
1 months
期刊介绍: ACS Macro Letters publishes research in all areas of contemporary soft matter science in which macromolecules play a key role, including nanotechnology, self-assembly, supramolecular chemistry, biomaterials, energy generation and storage, and renewable/sustainable materials. Submissions to ACS Macro Letters should justify clearly the rapid disclosure of the key elements of the study. The scope of the journal includes high-impact research of broad interest in all areas of polymer science and engineering, including cross-disciplinary research that interfaces with polymer science. With the launch of ACS Macro Letters, all Communications that were formerly published in Macromolecules and Biomacromolecules will be published as Letters in ACS Macro Letters.
期刊最新文献
Hydration Effects Driving Network Remodeling in Hydrogels during Cyclic Loading Understanding the Topology Freezing Temperature of Vitrimer-Like Materials through Complementary Structural and Rheological Analyses for Phase-Separated Network Light-Induced Transformation from Covalent to Supramolecular Polymer Networks Water Droplet Templating Technique to Design Three-Dimensionally Ordered Porous Structures of Polymer Film Sequence-Dependent Liquid Crystalline Ordering of Gapped DNA
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1