A system for in vitro selection of fully 2′-modified RNA aptamers†

IF 2.7 3区 化学 Q1 CHEMISTRY, ORGANIC Organic & Biomolecular Chemistry Pub Date : 2025-02-06 DOI:10.1039/D4OB01505C
Emily D. Ziperman, Kate B. Fitzpatrick, Malavika A. Nair, Alexander W. Sorum, Linda C. Hsieh-Wilson and Isaac J. Krauss
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Abstract

SFM4-3, KOD DGLNK, and Therminator polymerase are investigated for their compatibility with SELection with Modified Aptamers (SELMA), an aptamer discovery method that enables incorporation of large nucleobase modifications such as glycans. We demonstrated that with suitable modifications to the primer design and protocol, these enzymes are compatible with SELMA, enabling 2′-fluoro or 2′-methoxy ribose modifications at all positions. In the case of 2′-fluoro modifications, Therminator exhibits cleaner incorporation of an alkyne-modified nucleobase for click chemistry.

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一个体外选择完全2'修饰RNA适体的系统。
我们研究了SFM4-3、KOD DGLNK和Therminator聚合酶与SELMA (SELMA)的相容性,SELMA是一种核酸适配体发现方法,可以结合大核碱基修饰,如聚糖。我们证明,通过对引物设计和方案的适当修改,这些酶与SELMA兼容,可以在所有位置进行2'-氟或2'-甲氧基核糖修饰。在2'-氟修饰的情况下,Therminator显示更清洁地结合了炔修饰的核碱基,用于点击化学。
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来源期刊
Organic & Biomolecular Chemistry
Organic & Biomolecular Chemistry 化学-有机化学
CiteScore
5.50
自引率
9.40%
发文量
1056
审稿时长
1.3 months
期刊介绍: Organic & Biomolecular Chemistry is an international journal using integrated research in chemistry-organic chemistry. Founded in 2003 by the Royal Society of Chemistry, the journal is published in Semimonthly issues and has been indexed by SCIE, a leading international database. The journal focuses on the key research and cutting-edge progress in the field of chemistry-organic chemistry, publishes and reports the research results in this field in a timely manner, and is committed to becoming a window and platform for rapid academic exchanges among peers in this field. The journal's impact factor in 2023 is 2.9, and its CiteScore is 5.5.
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