明打威人群13个常染色体短串联重复(STR)位点的DNA多态性

Q3 Agricultural and Biological Sciences Pakistan Journal of Biological Sciences Pub Date : 2023-02-01 DOI:10.3923/pjbs.2023.101.107
Citra Manela, Rika Susanti, Djong Hon Tjong, Ahmad Yudianto
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引用次数: 0

摘要

背景和目标:</b>印度尼西亚由具有不同文化的各民族组成。然而,对印度尼西亚各民族的等位基因频率和遗传变异的研究尚未得到很好的建立。因此,我们对13个STR基因座进行了研究,以分析明打威人群作为印度尼西亚人群遗传数据库和遗传变异的增强。明打威是居住在西苏门答腊明打威岛的印度尼西亚部落之一。材料和方法:</b>使用PrepFiler试剂盒从血液中提取DNA,使用GlobalFiler试剂盒扩增13个位点。PCR产物检测采用ABI PRISM 3500遗传分析仪。采用EasyDNA和FORSTAT软件对数据进行处理和分析。& lt; b>结果:& lt; / b>获得了明打威人群13个常染色体位点的等位基因频率数据。TPOX的期望杂合度最小为0.607,FGA的期望杂合度最大为0.866。辨别力(PD)值从TPOX(0.792)到FGA(0.968)。所有位点的多态性信息含量(PIC)值均较高,TPOX为0.642,vWA为0.921。在这些发现中检测到3个离梯等位基因。TH01位点上的等位基因6.3和D18S51位点上的等位基因14.2是精致的。13个位点的平均期望杂合度和平均辨别力值分别为75.9和90.1%,表明基因多样性显著。& lt; b>结论:& lt; / b>这13个STR基因座可用于群体遗传学研究和法医鉴定。
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DNA Polymorphism of 13 Autosomal Short Tandem Repeats (STR) Loci in Mentawai Populations.

<b>Background and Objective:</b> Indonesia consists of various ethnic groups with diverse cultures. However, research on allele frequencies and genetic variations of each ethnic group in Indonesia has not been well established. Therefore, a study was conducted on 13 STR loci panels to analyze the mentawai population as an enhancement of the Indonesian population's genetic data library and genetic variation. Mentawai is one of the Indonesian tribes who live on Mentawai Island, West Sumatera. <b>Materials and Methods:</b> The PrepFiler kit to extract DNA from blood and the GlobalFiler kit for amplifying the 13 loci were used. The genetic analyzer ABI PRISM 3500 was used to detect PCR products. Data were processed and analyzed by EasyDNA and FORSTAT software. <b>Results:</b> The allele frequency data for 13 autosomal loci in Mentawai populations were obtained. Expected heterozygosity was found with a minimum of 0.607 for TPOX and a maximum of 0.866 for FGA. Power of discrimination (PD) values ranges from TPOX (0.792) to FGA (0.968). Polymorphic information content (PIC) values for all loci were high, ranging from 0.642 for TPOX to 0.921 for vWA. Three off-ladder alleles in these findings were detected. Allele 6.3 at the TH01 loci and allele 14.2 at the D18S51 loci are exquisite. The mean expected heterozygosity and mean power of discrimination value across the 13 loci were 75.9 and 90.1%, indicating striking gene diversity. <b>Conclusion:</b> These 13 STR loci can be used for population genetic studies and forensic identification.

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来源期刊
Pakistan Journal of Biological Sciences
Pakistan Journal of Biological Sciences Agricultural and Biological Sciences-Agronomy and Crop Science
CiteScore
1.90
自引率
0.00%
发文量
102
期刊介绍: Pakistan Journal of Biological Sciences (PJBS) is an international, peer-reviewed and well indexed scientific journal seeks to promote and disseminate the knowledge of biological sciences by publishing outstanding research in the field. Scope of the journal includes: Cell biology, developmental biology, structural biology, microbiology, entomology, toxicology, molecular biology & genetics, biochemistry, biotechnology, biodiversity, ecology, marine biology, plant biology and bioinformatics.
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