需要一个框架解决鱼类精子运动的时间方面导致社区水平的标准化。

IF 1.4 4区 生物学 Q4 DEVELOPMENTAL BIOLOGY Zebrafish Pub Date : 2022-08-01 DOI:10.1089/zeb.2022.0006
Harvey Blackburn, Leticia Torres, Yue Liu, Terrence R Tiersch
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引用次数: 4

摘要

活力是一个广泛可用的参数,可用于评估水生物种的精子质量。体外受精鱼类的精子在激活后通常经历一个动态的、短暂的运动期。在任意运动峰值处分配单一值的常见做法给可重复性、社区水平标准化和跨研究比较带来了挑战。本研究旨在探索标准化运动报告的统计方法,并为社区标准制定初步框架。采用计算机辅助精子分析方法,对14条斑马鱼(Danio rerio)共21,705个细胞的精子样本进行分析,在激活后10 s开始收集数据,每5 s间隔50 s。选择四个常见的运动变量进行分析:曲线速度,直线速度,节拍交叉频率和横向头部位移幅度。聚类分析用于评估男性内部和男性之间的精子亚群随时间的变化,最小二乘法用于探索时间方面,回归方程的一阶导数用于计算运动参数的变化率。聚类分析证明信息丰富,但重叠的短暂聚类对于提供标准化选项没有价值。对时间方面和变化率的分析表明,通过报告总体运动性-时间函数或在稳定的时间窗口而不是峰值运动性或随机时间报告,可以实现标准化。这些方法可以在提供可比信息的同时,最大限度地减少雄性间变异和亚种群动态变化引起的不一致性。确定了收集-处理-冷冻保存-解冻序列的动态报告的总体时间框架,为支持社区层面的标准化工作提供了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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The Need for a Framework Addressing the Temporal Aspects of Fish Sperm Motility Leading to Community-Level Standardization.

Motility is a widely available parameter that can be used to assess sperm quality of aquatic species. Sperm from fishes with external fertilization usually undergo a dynamic and short-lived period of motility after activation. The common practice of assigning a single value at an arbitrary peak of motility presents challenges for reproducibility, community-level standardization, and comparisons across studies. This study aimed to explore statistical approaches to standardize motility reporting, and to develop an initial framework for community-level standards. Sperm samples from 14 zebrafish (Danio rerio) with a total of 21,705 cells were analyzed by use of computer-assisted sperm analysis with data collection starting at 10 s after activation at 5-s intervals for 50 s. Four common motility variables were selected for analyses: curvilinear velocity, straight-line velocity, beat cross frequency, and amplitude of lateral head displacement. Cluster analysis was used to evaluate sperm subpopulations within and among males over time, least-square means was used to explore temporal aspects, and the first derivative of the regression equations was used to calculate the rate of change for the motility parameters. Cluster analysis proved informative, but overlapping ephemeral clusters were not valuable for providing standardization options. Analysis of temporal aspects and rate of change indicated opportunities for standardization by reporting the overall motility-time functions or reporting during stable time windows instead of peak motility or at random times. These approaches could minimize the inconsistencies caused by male-to-male variation and dynamic changes of subpopulations while providing comparable information. An overall temporal framework was identified for motility reporting along the collection-processing-cryopreservation-thawing sequence to provide a basis to support efforts of community-level standardization.

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来源期刊
Zebrafish
Zebrafish DEVELOPMENTAL BIOLOGY-ZOOLOGY
CiteScore
3.60
自引率
5.00%
发文量
29
审稿时长
3 months
期刊介绍: Zebrafish is the only peer-reviewed journal dedicated to the central role of zebrafish and other aquarium species as models for the study of vertebrate development, evolution, toxicology, and human disease. Due to its prolific reproduction and the external development of the transparent embryo, the zebrafish is a prime model for genetic and developmental studies. While genetically more distant from humans, the vertebrate zebrafish nevertheless has comparable organs and tissues, such as heart, kidney, pancreas, bones, and cartilage. Zebrafish introduced the new section TechnoFish, which highlights these innovations for the general zebrafish community. TechnoFish features two types of articles: TechnoFish Previews: Important, generally useful technical advances or valuable transgenic lines TechnoFish Methods: Brief descriptions of new methods, reagents, or transgenic lines that will be of widespread use in the zebrafish community Zebrafish coverage includes: Comparative genomics and evolution Molecular/cellular mechanisms of cell growth Genetic analysis of embryogenesis and disease Toxicological and infectious disease models Models for neurological disorders and aging New methods, tools, and experimental approaches Zebrafish also includes research with other aquarium species such as medaka, Fugu, and Xiphophorus.
期刊最新文献
Fish in a Dish: Using Zebrafish in Authentic Science Research Experiences for Under-represented High School Students from West Virginia. Novel Development of Magnetic Resonance Imaging to Quantify the Structural Anatomic Growth of Diverse Organs in Adult and Mutant Zebrafish. Zebrafish (Danio rerio) Gynogenetic Production by Heat Shock: Comparison Between Mitotic and Meiotic Treatment. Curcumin-Encapsulated Nanomicelles Promote Tissue Regeneration in Zebrafish Eleutheroembryo. Incorporating Primer Amplification Efficiencies in Quantitative Reverse Transcription Polymerase Chain Reaction Experiments; Considerations for Differential Gene Expression Analyses in Zebrafish.
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