一种新的人工智能方法来检测乳腺癌使用KNNet技术与EPM基因谱

IF 3.9 4区 生物学 Q1 GENETICS & HEREDITY Functional & Integrative Genomics Pub Date : 2023-09-18 DOI:10.1007/s10142-023-01227-5
Shubham Joshi, N. V. S. Natteshan, Ravi Rastogi, A. Sampathkumar, V. Pandimurugan, S. Sountharrajan
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摘要

女性最常见的癌症类型是乳腺癌,仅次于肺癌。本文综述了基因组学、表观遗传学和增量生物学活性方面的变化。肿瘤的发展要经过一系列阶段,涉及到一个单独的异常基因。尽管许多疾病会导致DNA突变,但大多数治疗都是为了缓解症状,而不是改变DNA。聚类短回文重复序列(CRISPR)或Cas9是发现和确认致瘤性基因组靶点的主要方法。提出了一种带有表达式规划模型的Kohonen神经网络用于基因选择。遗传选择的主要问题是在保持准确性的同时减少选择的特征数量。这个目的是系统地完成的。最后,该方法在遗传选择方面优于现有的量子松鼠启发算法和递归神经网络对立呼叫搜索算法。KNNet-EPM模型使用表达编程方法来识别乳腺癌的基因生物标志物。该方法的RAE为42%,灵敏度为93%,f1评分为88%,准确度为98%,kappa评分为83%,特异性为92%,MAE为30%。
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A novel artificial intelligence approach to detect the breast cancer using KNNet technique with EPM gene profiling

Women’s most frequent type of cancer is breast cancer, second only to lung cancer. This paper summarizes changes in genomics and epigenetics and incremental biological activities. A tumour develops through a series of phases involving a separate abnormal gene. Even though many diseases cause DNA mutations, most treatments are designed to relieve symptoms rather than change the DNA. Clustering short palindromic repeats (CRISPR) or Cas9 is the primary approach for discovering and confirming tumorigenic genomic targets. A Kohonen neural network with an expression programming model was developed for gene selection. The main problem in genetic selection is reducing the number of features chosen while maintaining accuracy. This purpose is accomplished systematically. In the end, the approach method performed better than the existing quantum squirrel-inspired algorithm and the recurrent neural network oppositional call search algorithm for genetic selection. The KNNet-EPM model used an expression programming approach to identify gene biomarkers for breast cancer. This method was achieved with RAE of 42%, sensitivity of 93%, f1 score of 88%, accuracy of 98%, kappa score of 83%, specificity of 92% and MAE of 30%.

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来源期刊
CiteScore
3.50
自引率
3.40%
发文量
92
审稿时长
2 months
期刊介绍: Functional & Integrative Genomics is devoted to large-scale studies of genomes and their functions, including systems analyses of biological processes. The journal will provide the research community an integrated platform where researchers can share, review and discuss their findings on important biological questions that will ultimately enable us to answer the fundamental question: How do genomes work?
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