TE Hub:面向社区的空间,用于共享和连接可转置元素注释的工具、数据、资源和方法。

IF 4.7 2区 生物学 Q1 GENETICS & HEREDITY Mobile DNA Pub Date : 2021-06-21 DOI:10.1186/s13100-021-00244-0
Tyler A Elliott, Tony Heitkam, Robert Hubley, Hadi Quesneville, Alexander Suh, Travis J Wheeler
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引用次数: 7

摘要

转座因子(te)广泛存在于大多数真核生物基因组中,在进化和功能上发挥着强大而多样的作用。对它们独特生物学的研究推动了大量数据库、软件、分类系统和注释指南的创建。可用的与te相关的方法和资源的多样性引起了兼容性问题,对于寻求直接指导或材料的研究人员和传播者来说可能是压倒性的。为了应对这些挑战,我们启动了一个新的资源TE Hub,它提供了一个空间,让TE社区的成员可以协作记录和创建资源和方法。该空间包括(1)一个以开放的wiki框架(https://tehub.org)组织的网站,(2)一个通过Twitter账户和Slack频道进行的对话框架,以及(3)双月一次的Hub Update视频聊天平台的开发。除了作为集中式存储库和通信平台之外,TE Hub还为改进各种工具和协议的集成、标准化和有效性奠定了基础。我们邀请TE社区,包括TE识别和分析方面的新手和专家,加入我们,扩大我们面向社区的资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation.

Transposable elements (TEs) play powerful and varied evolutionary and functional roles, and are widespread in most eukaryotic genomes. Research into their unique biology has driven the creation of a large collection of databases, software, classification systems, and annotation guidelines. The diversity of available TE-related methods and resources raises compatibility concerns and can be overwhelming to researchers and communicators seeking straightforward guidance or materials. To address these challenges, we have initiated a new resource, TE Hub, that provides a space where members of the TE community can collaborate to document and create resources and methods. The space consists of (1) a website organized with an open wiki framework,  https://tehub.org , (2) a conversation framework via a Twitter account and a Slack channel, and (3) bi-monthly Hub Update video chats on the platform's development. In addition to serving as a centralized repository and communication platform, TE Hub lays the foundation for improved integration, standardization, and effectiveness of diverse tools and protocols. We invite the TE community, both novices and experts in TE identification and analysis, to join us in expanding our community-oriented resource.

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来源期刊
Mobile DNA
Mobile DNA GENETICS & HEREDITY-
CiteScore
8.20
自引率
6.10%
发文量
26
审稿时长
11 weeks
期刊介绍: Mobile DNA is an online, peer-reviewed, open access journal that publishes articles providing novel insights into DNA rearrangements in all organisms, ranging from transposition and other types of recombination mechanisms to patterns and processes of mobile element and host genome evolution. In addition, the journal will consider articles on the utility of mobile genetic elements in biotechnological methods and protocols.
期刊最新文献
Analysis of pericentromere composition and structure elucidated the history of the Hieracium alpinum L. genome, revealing waves of transposable elements insertions. International congress on transposable elements (ICTE 2024) in Saint Malo: breaking down transposon waves and their impact. Accelerating de novo SINE annotation in plant and animal genomes. Association of hyperactivated transposon expression with exacerbated immune activation in systemic lupus erythematosus. Widespread HCD-tRNA derived SINEs in bivalves rely on multiple LINE partners and accumulate in genic regions.
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