{"title":"珍珠粟b12d样基因的鉴定与表达分析。","authors":"Zainab M Almutairi","doi":"10.1177/11769343221142285","DOIUrl":null,"url":null,"abstract":"<p><p><i>B12D-Like</i> is a member of the B12D domain-containing protein family, which includes several transmembrane proteins in plants. In this study, the cDNA of <i>PgB12D-Like</i> from <i>Pennisetum glaucum subsp. monodii</i> (Maire) Brunken was sequenced and characterized. The 446-bp cDNA for <i>PgB12D-Like</i> encodes for a deduced protein of 95 amino acids. The PgB12D-Like protein contains a B12D domain and a transmembrane helix embedded in the mitochondrial membrane. Cis-regulatory elements analysis reveals binding sites for various transcription factors involved in responses to stress, light, and plant hormones in the putative promoter sequence for <i>PgB12D-Like</i>. Several proteins involved in floral organ development were also found to have binding sites in the <i>PgB12D-Like</i> promoter, such as agamous-like proteins and squamosa promoter binding proteins. Real-time PCR reveals high expression of <i>PgB12D-Like</i> in flowers during heading, whereas its expression in a 4-day-old seedling shoot was the lowest. Moreover, cold, drought, and heat stress were found to upregulate <i>PgB12D-Like</i>, whereas gibberellic acid downregulated its expression in seedlings. The present study helps to uncover the function of the <i>B12D-Like</i> in response to plant hormones and abiotic stress during <i>P. glaucum</i> development.</p>","PeriodicalId":50472,"journal":{"name":"Evolutionary Bioinformatics","volume":"18 ","pages":"11769343221142285"},"PeriodicalIF":1.7000,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/f9/c6/10.1177_11769343221142285.PMC9793006.pdf","citationCount":"1","resultStr":"{\"title\":\"Characterization and Expression Analysis of <i>B12D-Like</i> Gene From Pearl Millet.\",\"authors\":\"Zainab M Almutairi\",\"doi\":\"10.1177/11769343221142285\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>B12D-Like</i> is a member of the B12D domain-containing protein family, which includes several transmembrane proteins in plants. In this study, the cDNA of <i>PgB12D-Like</i> from <i>Pennisetum glaucum subsp. monodii</i> (Maire) Brunken was sequenced and characterized. The 446-bp cDNA for <i>PgB12D-Like</i> encodes for a deduced protein of 95 amino acids. The PgB12D-Like protein contains a B12D domain and a transmembrane helix embedded in the mitochondrial membrane. Cis-regulatory elements analysis reveals binding sites for various transcription factors involved in responses to stress, light, and plant hormones in the putative promoter sequence for <i>PgB12D-Like</i>. Several proteins involved in floral organ development were also found to have binding sites in the <i>PgB12D-Like</i> promoter, such as agamous-like proteins and squamosa promoter binding proteins. Real-time PCR reveals high expression of <i>PgB12D-Like</i> in flowers during heading, whereas its expression in a 4-day-old seedling shoot was the lowest. Moreover, cold, drought, and heat stress were found to upregulate <i>PgB12D-Like</i>, whereas gibberellic acid downregulated its expression in seedlings. The present study helps to uncover the function of the <i>B12D-Like</i> in response to plant hormones and abiotic stress during <i>P. glaucum</i> development.</p>\",\"PeriodicalId\":50472,\"journal\":{\"name\":\"Evolutionary Bioinformatics\",\"volume\":\"18 \",\"pages\":\"11769343221142285\"},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2022-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/f9/c6/10.1177_11769343221142285.PMC9793006.pdf\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Evolutionary Bioinformatics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1177/11769343221142285\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"EVOLUTIONARY BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Evolutionary Bioinformatics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1177/11769343221142285","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"EVOLUTIONARY BIOLOGY","Score":null,"Total":0}
引用次数: 1
摘要
B12D- like是B12D结构域蛋白家族的一员,该家族包括植物中的几种跨膜蛋白。本研究从狼尾草中提取PgB12D-Like cDNA。对monodii (Maire) Brunken进行了测序和鉴定。PgB12D-Like的446 bp cDNA编码95个氨基酸的推断蛋白。pgb12d样蛋白包含一个B12D结构域和嵌入线粒体膜的跨膜螺旋。顺式调控元件分析揭示了PgB12D-Like的启动子序列中参与应激、光和植物激素应答的各种转录因子的结合位点。一些与花器官发育有关的蛋白也被发现在pgb12d样启动子上有结合位点,如琼脂样蛋白和鳞状启动子结合蛋白。Real-time PCR结果显示,PgB12D-Like在抽穗期间的花中表达量较高,而在4 d苗茎中的表达量最低。此外,寒冷、干旱和热胁迫可上调PgB12D-Like,而赤霉素酸可下调其在幼苗中的表达。本研究有助于揭示B12D-Like蛋白在青光带发育过程中对植物激素和非生物胁迫的响应功能。
Characterization and Expression Analysis of B12D-Like Gene From Pearl Millet.
B12D-Like is a member of the B12D domain-containing protein family, which includes several transmembrane proteins in plants. In this study, the cDNA of PgB12D-Like from Pennisetum glaucum subsp. monodii (Maire) Brunken was sequenced and characterized. The 446-bp cDNA for PgB12D-Like encodes for a deduced protein of 95 amino acids. The PgB12D-Like protein contains a B12D domain and a transmembrane helix embedded in the mitochondrial membrane. Cis-regulatory elements analysis reveals binding sites for various transcription factors involved in responses to stress, light, and plant hormones in the putative promoter sequence for PgB12D-Like. Several proteins involved in floral organ development were also found to have binding sites in the PgB12D-Like promoter, such as agamous-like proteins and squamosa promoter binding proteins. Real-time PCR reveals high expression of PgB12D-Like in flowers during heading, whereas its expression in a 4-day-old seedling shoot was the lowest. Moreover, cold, drought, and heat stress were found to upregulate PgB12D-Like, whereas gibberellic acid downregulated its expression in seedlings. The present study helps to uncover the function of the B12D-Like in response to plant hormones and abiotic stress during P. glaucum development.
期刊介绍:
Evolutionary Bioinformatics is an open access, peer reviewed international journal focusing on evolutionary bioinformatics. The journal aims to support understanding of organismal form and function through use of molecular, genetic, genomic and proteomic data by giving due consideration to its evolutionary context.