捷克分离的foxfoxavirus新成员黄单胞菌噬菌体M29的全基因组序列。

IF 1.9 4区医学 Q3 GENETICS & HEREDITY Virus Genes Pub Date : 2023-12-01 Epub Date: 2023-09-04 DOI:10.1007/s11262-023-02027-6

Mária Neoralová, Sára Brázdová, Aleš Eichmeier, Karel Petrzik

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摘要

新发现的黄单胞菌噬菌体M29 (Xanthomonas phage M29, Xp M29)是第一个感染油菜黄单胞菌的裂解噬菌体。从捷克共和国的卷心菜叶子中分离出的campestris (Xcc)。噬菌体由直径约60纳米的二十面体头部和直径约170纳米的可收缩尾部组成。全基因组大小为42 891 bp, G + C含量为59.6%，两条链上预测有69个orf。两两核苷酸比对显示，该菌株与最近报道的黄单胞菌噬菌体FoX3相似度最高(91.2%)。噬菌体Xp M29具有狭窄的宿主范围，感染21株Xcc中的5株。Xp M29是新形成的Foxunavirus属中的一个新种，直接归属于尾状病毒纲。

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Complete genome sequence of Xanthomonas phage M29, a new member of Foxunavirus isolated in the Czech Republic.

The newly discovered Xanthomonas phage M29 (Xp M29) is the first lytic phage infecting Xanthomonas campestris pv. campestris (Xcc) that was isolated from cabbage leaves in the Czech Republic. The phage consists of icosahedral head approximately 60 nm in diameter and a probably contractile tail of 170 nm. The complete genome size was 42 891 bp, with a G + C content of 59.6%, and 69 ORFs were predicted on both strands. Pairwise nucleotide comparison showed the highest similarity with the recently described Xanthomonas phage FoX3 (91.2%). Bacteriophage Xp M29 has a narrow host range infecting 5 out of 21 isolates of Xcc. Xp M29 is a novel species in a newly formed genus Foxunavirus assigned directly to the class Caudoviricetes.

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来源期刊

Virus Genes 医学-病毒学

CiteScore

3.30

自引率

0.00%

发文量

审稿时长

3 months

期刊介绍： Viruses are convenient models for the elucidation of life processes. The study of viruses is again on the cutting edge of biological sciences: systems biology, genomics, proteomics, metagenomics, using the newest most powerful tools. Huge amounts of new details on virus interactions with the cell, other pathogens and the hosts – animal (including human), insect, fungal, plant, bacterial, and archaeal - and their role in infection and disease are forthcoming in perplexing details requiring analysis and comments. Virus Genes is dedicated to the publication of studies on the structure and function of viruses and their genes, the molecular and systems interactions with the host and all applications derived thereof, providing a forum for the analysis of data and discussion of its implications, and the development of new hypotheses.