利用叶绿体基因组测序和DNA条形码标记进行凌霄花和杨金花的分化。

IF 2.3 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Genome Pub Date : 2023-02-01 DOI:10.1139/gen-2022-0063
Hiu-Lam Ngai, Bobby Lim-Ho Kong, David Tai-Wai Lau, P C Shaw
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引用次数: 2

摘要

凌霄花(山茱萸,桔梗)舒姆(K. Schum)是一种通过促进血液循环来促进利尿和治疗血液相关疾病的草药。它还具有抗炎和抗氧化的特性。这种无毒植物在市场上经常与有毒的杨金花(Daturae Metelis Flos, Datura metel Linnaeus)混淆,导致严重的抗胆碱能中毒。这两种草药的混淆是由于它们的外观相似。在我们的研究中,我们比较了两种植物的完整叶绿体基因组,发现它们在基因含量和基因排列上有很大的不同。微卫星序列和复重复序列在数目和重复基序上也存在显著差异。我们使用通用引物扩增rbcL、matK、psbA-trnH和ITS2区域,成功分化了两株植物。此外,我们根据叶绿体基因组rps14和rpoC1区域的核苷酸差异设计了两对引物,以提供额外的鉴定标记。通用引物和特异引物结合使用,能准确区分凌霄花和阳金花。
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Differentiation of Lingxiaohua and Yangjinhua by chloroplast genome sequencing and DNA barcoding markers.

Lingxiaohua (Campsis Flos, Campsis grandiflora (Thunb.) K. Schum) is a medicinal herb used for promoting diuresis and treating blood-related disorders by the promotion of blood circulation. It also possesses anti-inflammatory and antioxidative properties. This non-poisonous plant is frequently confused with poisonous Yangjinhua (Daturae Metelis Flos, Datura metel Linnaeus) in the market, resulting in serious anticholinergic poisoning. The confusion of these two herbs is due to the similarity in their appearances. In our study, we compared the complete chloroplast genomes of the two plants and found that they are very different in terms of their gene content and gene arrangement. There were also significant differences in the number and repeating motifs of microsatellites and complex repeats. We used universal primers for the amplification of rbcL, matK, psbA-trnH, and ITS2 regions and successfully differentiated the two plants. Furthermore, we designed two pairs of primers based on the nucleotide differences in chloroplast genomes at the rps14 and rpoC1 regions to provide additional authentication markers. The universal primers and specific primers when used together can accurately discriminate Lingxiaohua and Yangjinhua.

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来源期刊
Genome
Genome 生物-生物工程与应用微生物
CiteScore
5.30
自引率
3.20%
发文量
42
审稿时长
6-12 weeks
期刊介绍: Genome is a monthly journal, established in 1959, that publishes original research articles, reviews, mini-reviews, current opinions, and commentaries. Areas of interest include general genetics and genomics, cytogenetics, molecular and evolutionary genetics, developmental genetics, population genetics, phylogenomics, molecular identification, as well as emerging areas such as ecological, comparative, and functional genomics.
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