在日本为基因组分析构建云计算环境。

IF 1 Q4 GENETICS & HEREDITY Human Genome Variation Pub Date : 2022-12-14 DOI:10.1038/s41439-022-00223-8
Osamu Ogasawara
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引用次数: 0

摘要

这篇综述文章描述了基因组医学领域的数据存档和计算基础设施的现状,主要集中在日本的情况。我首先介绍一下日本超级计算机的运行状况,在日本,高性能计算基础设施(HPCI)的运行是为了满足一般科学的各种计算需求。由于这个HPCI由位于全国各地的各种架构的超级计算机组成,这些超级计算机通过高速网络连接,包括专门研究基因组科学的超级计算机,因此探讨了其对基因组数据爆炸式增长的响应状态,包括国际核苷酸序列数据库协作(INSDC)数据档案。另外,鉴于计算需求的快速增长以及支持国际数据共享和国际数据分析项目,显然需要促进商业云计算环境的使用,我解释了日本政府如何根据其网络安全战略制定了一系列使用云计算的指导方针,并开始为政府机构构建政府云。我还将仔细考虑用户关心的其他几个问题。最后,我将展示日本的主要云计算基础设施目前如何向多云和混合云配置发展。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Building cloud computing environments for genome analysis in Japan.

This review article describes the current status of data archiving and computational infrastructure in the field of genomic medicine, focusing primarily on the situation in Japan. I begin by introducing the status of supercomputer operations in Japan, where a high-performance computing infrastructure (HPCI) is operated to meet the diverse computational needs of science in general. Since this HPCI consists of supercomputers of various architectures located across the nation connected via a high-speed network, including supercomputers specialized in genome science, the status of its response to the explosive increase in genomic data, including the International Nucleotide Sequence Database Collaboration (INSDC) data archive, is explored. Separately, since it is clear that the use of commercial cloud computing environments needs to be promoted, both in light of the rapid increase in computing demands and to support international data sharing and international data analysis projects, I explain how the Japanese government has established a series of guidelines for the use of cloud computing based on its cybersecurity strategy and has begun to build a government cloud for government agencies. I will also carefully consider several other issues of user concern. Finally, I will show how Japan's major cloud computing infrastructure is currently evolving toward a multicloud and hybrid cloud configuration.

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来源期刊
Human Genome Variation
Human Genome Variation Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
2.30
自引率
0.00%
发文量
39
审稿时长
13 weeks
期刊最新文献
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