{"title":"基于玻尔兹曼热激活扩散的分子模拟——在ARUZ -大规模并行fpga机上的实现","authors":"G. Jablonski, Piotr Amrozik, K. Hałagan","doi":"10.23919/MIXDES52406.2021.9497628","DOIUrl":null,"url":null,"abstract":"ARUZ (Analizator Rzeczywistych Układów Złożonych, Analyser of Real Complex Systems) is a massively parallel FPGA-based simulator located at BioNanoPark Lodz. This machine has been designed to reflect the Dynamic Lattice Liquid (DLL) algorithm in hardware. In this paper, FPGA implementation details are presented for DLL functionality extension. This extension allows taking into account potential energy barriers in molecular simulations performed on ARUZ and thus modeling thermally-activated diffusion processes in liquids.","PeriodicalId":375541,"journal":{"name":"2021 28th International Conference on Mixed Design of Integrated Circuits and System","volume":"32 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2021-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Molecular Simulations Using Boltzmann’s Thermally Activated Diffusion - Implementation on ARUZ – Massively-parallel FPGA-based Machine\",\"authors\":\"G. Jablonski, Piotr Amrozik, K. Hałagan\",\"doi\":\"10.23919/MIXDES52406.2021.9497628\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"ARUZ (Analizator Rzeczywistych Układów Złożonych, Analyser of Real Complex Systems) is a massively parallel FPGA-based simulator located at BioNanoPark Lodz. This machine has been designed to reflect the Dynamic Lattice Liquid (DLL) algorithm in hardware. In this paper, FPGA implementation details are presented for DLL functionality extension. This extension allows taking into account potential energy barriers in molecular simulations performed on ARUZ and thus modeling thermally-activated diffusion processes in liquids.\",\"PeriodicalId\":375541,\"journal\":{\"name\":\"2021 28th International Conference on Mixed Design of Integrated Circuits and System\",\"volume\":\"32 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2021-06-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2021 28th International Conference on Mixed Design of Integrated Circuits and System\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.23919/MIXDES52406.2021.9497628\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2021 28th International Conference on Mixed Design of Integrated Circuits and System","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.23919/MIXDES52406.2021.9497628","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
ARUZ (analyzer Rzeczywistych Układów Złożonych，分析仪of Real Complex Systems)是位于bionanpark Lodz的大规模并行fpga模拟器。这台机器在硬件上体现了动态点阵液体(DLL)算法。本文给出了DLL功能扩展的FPGA实现细节。这个扩展允许考虑到在ARUZ上进行的分子模拟中的势能障碍，从而模拟液体中的热激活扩散过程。
Molecular Simulations Using Boltzmann’s Thermally Activated Diffusion - Implementation on ARUZ – Massively-parallel FPGA-based Machine
ARUZ (Analizator Rzeczywistych Układów Złożonych, Analyser of Real Complex Systems) is a massively parallel FPGA-based simulator located at BioNanoPark Lodz. This machine has been designed to reflect the Dynamic Lattice Liquid (DLL) algorithm in hardware. In this paper, FPGA implementation details are presented for DLL functionality extension. This extension allows taking into account potential energy barriers in molecular simulations performed on ARUZ and thus modeling thermally-activated diffusion processes in liquids.
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