用于蛋白质结构触觉可视化的VMD插件

Olivia Shaw, Jodi A. Hadden-Perilla
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引用次数: 3

摘要

包括生物学、生物化学和生物物理学在内的科学学科涉及对蛋白质及其功能的研究。蛋白质结构的可视化是盲人或视障学生在这些学科中进行教育和研究的障碍。在这里,我们提供了一个软件插件,可以使用免费的生物分子可视化软件Visual Molecular Dynamics (VMD)和蛋白质结构数据(通过蛋白质数据库公开提供)轻松生成可变高度的蛋白质触觉图形。我们的方法还支持在电子可刷新触觉显示设备上具有VMD的蛋白质的交互式触觉可视化。在学术实验室中采用我们的方法使一名盲人本科生能够与她的视力正常的同龄人一起进行研究。通过让盲人或视障学生也能接触到蛋白质结构的研究,我们的目标是促进STEM教育和研究的多样性和包容性。
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TactViz: A VMD Plugin for Tactile Visualization of Protein Structures
Scientific disciplines spanning biology, biochemistry, and biophysics involve the study of proteins and their functions. Visualization of protein structures represents a barrier to education and research in these disciplines for students who are blind or visually impaired. Here, we present a software plugin for readily producing variable-height tactile graphics of proteins using the free biomolecular visualization software Visual Molecular Dynamics (VMD) and protein structure data that is publicly available through the Protein Data Bank. Our method also supports interactive tactile visualization of proteins with VMD on electronic refreshable tactile display devices. Employing our method in an academic laboratory has enabled an undergraduate student who is blind to carry out research alongside her sighted peers. By making the study of protein structures accessible to students who are blind or visually impaired, we aim to promote diversity and inclusion in STEM education and research.
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