全外显子组测序(WES)分析ABO亚群鉴定

Sutthiphan Prananpaeng, Thiradon Thaiyanto, Ratsameetip Wita, N. Anukul
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引用次数: 0

摘要

利用新一代测序技术分析血型特征,可确保输血安全。为了避免血型不相容对输血造成的不良影响,本研究利用全外显子组测序分析研究血型的基因组特征。全外显子组测序虽然耗时且数据密集,但为血型分析提供了关键信息。本研究提出了一个两步分析框架,包括利用GATK进行WES原始数据管道分析,得到ABO特异性基因的单核苷酸多态性和变异信息,以及等位基因特异性分析和潜在血型鉴定。提出的框架有助于根据基因组学数据识别ABO亚群的特定等位基因,从而确保输血过程中的血型兼容性,最终提高输血安全性。
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Whole-Exome Sequencing (WES) Analysis for ABO Subgroups Identification
Analysis of blood group characteristics using next-generation sequencing can be used to ensure blood transfusion safety. With the aim of avoiding adverse effects in blood transfusions caused by blood group incompatibility, this research studies genomic characteristics of blood groups using whole-exome sequencing analysis. Whole-Exome Sequencing, although time-consuming and data-intensive, provides crucial information for blood group analysis. The research proposes a two-step analysis framework including WES raw data pipeline analysis using GATK, resulting in single nucleotide polymor-phisms and variant information in ABO specific gene, and allele-specific analysis and potential blood group identification. The proposed framework helps identify specific alleles of ABO subgroup based on genomics data which can ensure blood type compatibility in the transfusion process which ultimately leading to improved safety in blood transfusions.
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