新一代测序数据分析方法X.通过批量提交系统注册到DDBJ

Yasuhiro Tanizawa, T. Fujisawa, J. Mashima, Kyungbum Lee, M. Tohno, M. Sakamoto, M. Ohkuma, Yasukazu Nakamura, K. Shimizu, K. Kadota
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摘要

国际核苷酸序列数据库合作组织(INSDC)维护了一个初级序列数据库,该数据库直接从研究人员那里收集实验确定的核苷酸序列数据。现在,在大多数科学期刊上发表研究成果,必须向INSDC提交数据。然而,将数据存入INSDC的程序是一个很大的负担,特别是对于那些不熟悉计算机技能的人。最近,我们开发了一个基因组注释管道DFAST,它也有助于数据沉积到INSDC。在本文中,我们展示了使用DFAST web服务存放带注释的基因组序列数据的指令。补充资料可参阅我们的网站http://www.iu.a.u-tokyo.ac.jp/~kadota/r_seq.html#about_book_ JSLAB。
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Methods for analyzing next-generation sequencing data X. Registration to DDBJ through Mass Submission System
The International Nucleotide Sequence Database Collaboration (INSDC) has maintained a primary sequence database that collects experimentally-determined nucleotide sequence data directly from researchers. Now data deposition to the INSDC is mandatory for research publication at most of the scientific journals. However, the procedure to deposit data to the INSDC is a big burden, especially for those who are not familiar with computer skills. Recently, we have developed a genome annotation pipeline DFAST, which also assists data deposition to the INSDC. In this article, we show the instruction to deposit annotated genome sequence data using the DFAST web service. Supplementary materials are available at our web site, http://www.iu.a.u-tokyo.ac.jp/~kadota/r_seq.html#about_book_ JSLAB.
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