复杂基因组数据与游戏引擎的交互可视化

Nader Hasan Khalifa, Quang Vinh Nguyen, S. Simoff, D. Catchpoole
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引用次数: 1

摘要

图形游戏引擎引入了更先进的技术,通过提供用户友好但功能强大的工具来设计和开发新游戏,以改善渲染,图像质量,人体工程学和用户体验。人类基因组中有成千上万个基因,它们包含了关于特定个体患者及其疾病的生物学机制的信息。生物医学和基因组数据的复杂性通常需要有效的视觉信息处理和分析。不幸的是,这个领域可用的可视化技术是有限的,许多是静态形式的。这里的开放性研究问题如下:我们是否可以从这些电子游戏中学到什么?或者游戏技术是否能够帮助我们探索非专业人士也能接触到的新图像理念?本文提出了一个可视化的分析模型,可以使用Unity3D游戏技术分析大型和复杂的基因组数据。这包括交互式可视化,提供患者队列的概述和个体基因的详细视图。我们通过儿童癌症b细胞急性淋巴细胞白血病的数据集说明了我们的方法在指导有效治疗决策方面的有效性。
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Interaction Visualisation of Complex Genomic Data with Game Engines
Graphic game engines have introduced even more advanced technologies to improve the rendering, image quality, ergonomics, and user experience of their creations by providing user-friendly yet powerful tools to design and develop new games. There are thousands of genes in the human genome that contain information about specific individual patients and the biological mechanisms of their diseases. The complexity in biomedical and genomic data usually requires effective visual information processing and analytics. Unfortunately, available visualisation techniques for this domain are limited, many in static forms. The open study questions here are as follow: Are there lessons to be learnt from these video games? Or could the game technology help us explore new graphic ideas accessible to non-specialists? This paper presents a visual analytics model that enables the analysis of large and complex genomic data using Unity3D game technology. This includes an interactive visualisation, providing an overview of the patient cohort with a detailed view of the individual genes. We illustrate the effectiveness of our approach in guiding the effective treatment decision in the cohort through datasets from the childhood cancer B-Cell acute lymphoblastic leukaemia.
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