M. Mirto, S. Vicario, D. Tartarini, I. Epicoco, C. Saccone, G. Aloisio
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引用次数: 3
摘要
这项工作展示了在LIBI(国际生物信息学实验室)平台上并行应用系统发育推断(MrBayes)的网格移植。此外，还介绍了11个系统发育的生物信息学案例分析，包括一系列代表鳞翅目条形码参考数据库的大序列数据集。案例研究在平台上进行了测试，并描述了Salento大学SPACI联盟的Itanium HP XC6000 (Intel Itanium 2处理器和Quadrics互连)的加速和效率。
Bayesian Phylogenetic Inference in the LIBI Grid Platform: A Tool to Explore Large Data Sets
This works presents the porting on the grid of a parallel application of phylogenetic inference, MrBayes, in the LIBI (International Laboratory of Bioinformatics) platform. Moreover a bioinformatic case study about the analysis of 11 phylogenies, including a series of large sequences data sets that represent the nascent barcode reference database for Lepidoptera is also presented. The case study has been tested on the platform and the speedup and efficiency on Itanium HP XC6000 (Intel Itanium 2 processors and Quadrics interconnects) of the SPACI consortium, University of Salento, are described.
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