从整张幻灯片图像中提取Gleason组织和前列腺癌分级的扩展残差分层分割框架

Taimur Hassan, Bilal Hassan, A. El-Baz, N. Werghi
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引用次数: 10

摘要

前列腺癌(PCa)是男性中第二致命的癌症,它可以通过检查格里森组织的结构表征来进行临床分级。本文提出了一种新的Gleason组织分割方法(逐块分割),以便从整个幻灯片图像(WSI)中对PCa进行分级。此外,该方法还包括两个主要贡献:1)混合扩张因子和潜在空间表示分层分解的协同作用,用于有效提取Gleason组织;2)三层损失函数,可以惩罚不同的语义分割模型,以准确提取高度相关的模式。除此之外,所提出的框架已在包含10,516个完整切片扫描(约71.7M补丁)的大规模PCa数据集上进行了广泛评估,在提取Gleason组织方面,它比最先进的方案高出3.22%(就平均相交-过联合而言),在PCa的进展分级方面,它比最先进的方案高出6.91%(就F1分数而言)。
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A Dilated Residual Hierarchically Fashioned Segmentation Framework for Extracting Gleason Tissues and Grading Prostate Cancer from Whole Slide Images
Prostate cancer (PCa) is the second deadliest form of cancer in males, and it can be clinically graded by examining the structural representations of Gleason tissues. This paper proposes a new method for segmenting the Gleason tissues (patch-wise) in order to grade PCa from the whole slide images (WSI). Also, the proposed approach encompasses two main contributions: 1) A synergy of hybrid dilation factors and hierarchical decomposition of latent space representation for effective Gleason tissues extraction, and 2) A three-tiered loss function which can penalize different semantic segmentation models for accurately extracting the highly correlated patterns. In addition to this, the proposed framework has been extensively evaluated on a large-scale PCa dataset containing 10,516 whole slide scans (with around 71.7M patches), where it outperforms state-of-the-art schemes by 3.22% (in terms of mean intersection-over-union) for extracting the Gleason tissues and 6.91 % (in terms of F1 score) for grading the progression of PCa.
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