erica:使洞察从头开始分子动力学模拟

K. Hall, Edelsys Codorniu-Hernández, P. Kusalik, Sheelagh Carpendale
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引用次数: 0

摘要

我们提出了电子和辐射聚焦瞬时坐标动画(erica)作为一种可视化方法来表示从头算分子动力学(AIMD)模拟产生的电子结构数据和核坐标的时间演变。我们开发erica是为了使化学家能够分析水中两个羟基自由基之间相互作用的AIMD模拟。因此,我们使用这些模拟来说明erica,并讨论了如何将erica推广到其他aim模拟中。通过使用erica,化学家们对羟基自由基化学有了新的认识。
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ERICAs: Enabling insights into ab initio Molecular Dynamics simulations
We present Electronic & Radially-focused Instantaneous Coordinate Animations (ERICAs) as a visualization approach to represent the time evolution of the electronic structure data and nuclear coordinates resulting from ab initio Molecular Dynamics (AIMD) simulations. We developed ERICAs in order to enable chemists to analyze AIMD simulations of the interactions between two hydroxyl radicals in water. Consequently, we illustrate ERICAs using these simulations, and discuss how ERICAs can be generalized to other AIMD simulations. By using ERICAs, chemists have gained new insights into hydroxyl radical chemistry.
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