Michael F. Meyer, Merritt E. Harlan, Robert T. Hensley, Qing Zhan, Carolina C. Barbosa, Nahit S. Börekçi, Jonathan J. Borrelli, Tuba Bucak, Alli N. Cramer, Johannes Feldbauer, Robert Ladwig, Jorrit P. Mesman, Isabella A. Oleksy, Rachel M. Pilla, Jacob A. Zwart, Elisa Calamita, Nicholas J. Gubbins, Mary E. Lofton, Daniel A. Maciel, Nicholas S. Marzolf, Freya Olsson, Audrey N. Thellman, R. Quinn Thomas, Michael J. Vlah
{"title":"黑客攻击湖沼学讲习班和 DSOS23:为数据科学、开放科学和水产科学的联系培养人才","authors":"Michael F. Meyer, Merritt E. Harlan, Robert T. Hensley, Qing Zhan, Carolina C. Barbosa, Nahit S. Börekçi, Jonathan J. Borrelli, Tuba Bucak, Alli N. Cramer, Johannes Feldbauer, Robert Ladwig, Jorrit P. Mesman, Isabella A. Oleksy, Rachel M. Pilla, Jacob A. Zwart, Elisa Calamita, Nicholas J. Gubbins, Mary E. Lofton, Daniel A. Maciel, Nicholas S. Marzolf, Freya Olsson, Audrey N. Thellman, R. Quinn Thomas, Michael J. Vlah","doi":"10.1002/lob.10607","DOIUrl":null,"url":null,"abstract":"<p>The 3<sup>rd</sup> Aquatic Ecosystem MOdeling Network—Junior (AEMON-J) Hacking Limnology Workshop and 4<sup>th</sup> Virtual Summit: Incorporating Data Science and Open Science in the Aquatic Sciences (DSOS) took place 24–28 July 2023. This joint event followed a similar structure to previous years, comprising three days of workshops followed by two days of the virtual summit (Meyer and Zwart <span>2020</span>; Meyer et al. <span>2021<i>a</i></span>, <span>2022</span>). During the week, over 100 aquatic science practitioners and enthusiasts gathered to exchange knowledge and to share experiences working in the nexus of data science, open science, remote sensing, and the aquatic sciences.</p><p>As in previous years, accessibility for a global audience was at the forefront of both events. To prevent financial restrictions, there were no registration fees. All recordings and workshop materials were made freely available on the Open Science Framework archive (Meyer et al. <span>2021<i>b</i></span>; https://osf.io/682v5/) for asynchronous viewing and access following the event. Having videos subtitled helped overcome language barriers, allowing attendees to translate subtitles from English into their preferred language using available software. Relative to the 50 countries represented in the 2021 and 2022 workshop and summit (Meyer et al. <span>2021<i>a</i></span>, <span>2022</span>), the 2023 workshop and summit experienced an expansion in global representation, with registrants from more than 60 countries. The most represented countries included the United States (42% of registrants), Canada (8.2%), Nigeria (8.2%), Germany (5%), and Brazil (3.8%). The majority of registrants from newly represented countries were largely located in the Caribbean. With respect to career-stage, most participants identified as being in early career positions (i.e., graduate students and post-doctoral researchers; ~ 57%).</p><p>Leading up to the 2023 summit, the leadership team began a period of restructuring, a process aimed to usher in fresh perspectives and formalize the group as a community of practice (Fig. 1). This restructuring included an expansion of the leadership teams, including a steering team, a summit team, a workshop team, and an external advisory team. This expansion was realized in part to further establish the growing AEMON-J and DSOS communities, as well as enable clearer succession paths, new leadership opportunities, and organizational sustainability. The steering team, as highlighted in Fig. 1, will be instrumental in advising long-term development and goals, ensuring the community can move past short-term planning for individual summits to envision and achieve long-term goals. As the combined AEMON-J + DSOS organizing teams strive to be composed of early career researchers, this long-term planning is crucial for the broader community. To involve community members in the strategic development, a listening session was organized as a part of the 2023 summit. The goal of the listening session was to receive feedback from community members on what they appreciated about the workshops and summit. By engaging community feedback, the DSOS and AEMON-J leadership teams sought to create a more indelible mark in the nexus of data science, open science, as well as the larger aquatic sciences community by keeping the diversity, equity, inclusion, and accessibility of the larger community of practice at the forefront.</p><p>The AEMON-J “Hacking Limnology” workshop series ran during the first three days of the week. The goals of the workshops were to introduce early career scientists to various open datasets and to provide coding skills necessary to access and work with the data. The structure of the workshops was similar to previous years (Meyer et al., <span>2022</span>; Meyer et al., <span>2021<i>a</i></span>,<span>\n <i>b</i></span>). For each day, a pre-recorded introductory video was made available to watch the week before the workshop, so participants could familiarize themselves with the fundamental concepts needed. A pre-recorded, 15-minute keynote presentation was live streamed, followed by a live question-and-answer session with both the introductory and keynote speakers. After a short break, the bulk of each workshop consisted of a two-hour, live coding session, where attendees were encouraged to live code along on their own machines. Each day concluded with a virtual social hour, during which attendees could ask further questions, network, and discuss future collaborations.</p><p>As in past years, each day had a specific theme. The theme for the first day was “Remote Sensing” and focused on how satellite-based observations, coupled with machine learning, can be used to monitor water quality over large spatiotemporal scales (Lehmann et al., <span>2023</span>). The theme of the second day was “Ecological Forecasting” and focused on the Ecological Forecasting Initiative's National Ecological Observatory Network Ecological Forecast Challenge (Thomas et al., <span>2023</span>), aimed at generating real-time forecasts of water temperature and dissolved oxygen in freshwater lakes across the continental United States. The theme of the third day was “Catchment Modeling” and focused on the MacroSheds dataset (Vlah et al., <span>2023</span>), which contains discharge and chemistry data from hundreds of watersheds and can be used to estimate solute fluxes.</p><p>All workshop materials (introductory and plenary videos, recording of live coding sessions, links to Github repositories with R code) are archived and freely available on the Open Science Framework repository (Meyer et al., <span>2021<i>b</i></span>; https://osf.io/682v5/), where they can serve as useful training material for independent study as well as organized graduate training (Table 1).</p><p>The 4<sup>th</sup> Virtual Summit for Incorporating Data Science and Open Science in the Aquatic Sciences (DSOS23) ran 27–28 July 2023 and featured 17 speakers who presented on the various ways they engaged in the nexus of data science, open science, and the aquatic sciences. The talks were divided into four sessions: “Big Data,” “Data Intensive Models,” “Applications of Open Science,” and, new this year, “Remote Sensing of Aquatic Environments”. Similar to previous years, 4–5 pre-recorded 10-minute talks were streamed sequentially, followed by a 20-minute live Q&A session moderated by organizers. The Q&A session was entirely in English, although live captions could be generated during the session with dictation software. As in the case of the Hacking Limnology workshops, talks include subtitles and are archived in the Open Science Framework repository (Meyer et al., <span>2021<i>c</i></span>). Topics within the sessions ranged from metagenomic sequencing to modeling of lake evaporation, runoff-driven soil erosion, optimal stream gage placement, phytoplankton succession, lake metabolism, as well as satellite-derived water quality estimates and community science earth observations. Each presentation highlighted the importance of access and maintenance of open data as well as reproducible science.</p><p>The summit included a career panel highlighting careers in data science and open science. Panelists included Joshua Fisher (Hydrosat and Chapman University), Stephen Kennedy (UrbanFootprint), Roxane Maranger (University of Montreal), Anika Pyle (Colorado State University), and Emily Read (U.S. Geological Survey). This group spanned a wide range of careers, perspectives, and approaches to the data-intensive sciences, and many focused on the importance of data visualization to increase accessibility and develop common ground with interdisciplinary work. Discussion included advice that panelists would tell their former selves, perspectives on leading interdisciplinary teams, suggestions for being creative in data visualization and interpretation, and strategies for keeping data visualization fun and innovative.</p><p>The summit also included a community listening session, where members of the DSOS community could share their experiences with the present and past summits. The three main goals of the listening session were to identify (1) why participants come to Hacking Limnology and DSOS, (2) what participants wish existed or considered unnecessary, and (3) who might be interested in leadership roles for the community. Approximately, 30 community members outside of the organizing committee contributed feedback. They highlighted the unique format, pre-recorded and captioned videos, the welcoming community, accessible workshops, and ambitious young researchers as reasons why they decided to join the summit. A challenge for participants was accessible time zones, especially for those located in Australia and Asia.</p><p>Just like previous workshops and summits, the AEMON-J Hacking Limnology Workshop and DSOS23 attracted wide interest and earned overwhelmingly positive feedback from the community. Yet, much like the 2022 workshops and summit, synchronous engagement was lower than events in 2020 and 2021. While over 550 people registered for the combined workshops and summit events, approximately 100 registrants (~ 18%) engaged synchronously each day. This decrease from ~ 22% in 2020 and 2021 to ~ 18% in 2022 and 2023 possibly stems from the decline of restrictions associated with the COVID-19 pandemic, namely the increase in face-to-face conferences and workshops. We also observed declining attendance through the week, potentially reflecting a need to balance regular work requirements with a week-long virtual meeting.</p><p>Admittedly, these same challenges will likely continue to be common for most virtual events, and so the organizational team is committed to striking a balance between in-person and synchronous, virtual engagement. For example, a potential opportunity includes coordinating events with in-person meetings, while still streaming the event virtually to enable worldwide participation. In-person meetings can build on the momentum generated by virtual DSOS and AEMON-J events as well as the in-person social hours organized at the Joint Aquatic Sciences Meeting in 2022 and the ASLO 2023 Meeting. Also, by distributing events throughout the year and empowering community members to self-organize their own events, the organizational team is keen to create opportunities for engagement beyond just the Hacking Limnology workshops and virtual summit. The organizational team encourages those interested in joining the network or organizing potential workshops to contact an organizational team member directly (https://aquaticdatasciopensci.github.io/info/).</p><p>With the growth and potential for the combined AEMON-J and DSOS community, the organizational team is encouraged by the breadth and number of community members interested in realizing this growth. Numerous community members expressed interest in helping with social media presence, organizing workshops, and finding speakers. Likewise, the newly formed Advisory Team is intended to increase the footprint of AEMON-J and DSOS throughout the environmental sciences, thereby enabling new connections and collaborations, as well as longer-term visions. Furthermore, the increasing number of first-year organizational team members means that new ideas, topics, and initiatives can push forward, while also allowing founding members to focus on the sustainability of the larger community and provide institutional memory where necessary.</p>","PeriodicalId":40008,"journal":{"name":"Limnology and Oceanography Bulletin","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2023-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/lob.10607","citationCount":"0","resultStr":"{\"title\":\"Hacking Limnology Workshops and DSOS23: Growing a Workforce for the Nexus of Data Science, Open Science, and the Aquatic Sciences\",\"authors\":\"Michael F. Meyer, Merritt E. Harlan, Robert T. Hensley, Qing Zhan, Carolina C. Barbosa, Nahit S. Börekçi, Jonathan J. Borrelli, Tuba Bucak, Alli N. Cramer, Johannes Feldbauer, Robert Ladwig, Jorrit P. Mesman, Isabella A. Oleksy, Rachel M. Pilla, Jacob A. Zwart, Elisa Calamita, Nicholas J. Gubbins, Mary E. Lofton, Daniel A. Maciel, Nicholas S. Marzolf, Freya Olsson, Audrey N. Thellman, R. Quinn Thomas, Michael J. Vlah\",\"doi\":\"10.1002/lob.10607\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>The 3<sup>rd</sup> Aquatic Ecosystem MOdeling Network—Junior (AEMON-J) Hacking Limnology Workshop and 4<sup>th</sup> Virtual Summit: Incorporating Data Science and Open Science in the Aquatic Sciences (DSOS) took place 24–28 July 2023. This joint event followed a similar structure to previous years, comprising three days of workshops followed by two days of the virtual summit (Meyer and Zwart <span>2020</span>; Meyer et al. <span>2021<i>a</i></span>, <span>2022</span>). During the week, over 100 aquatic science practitioners and enthusiasts gathered to exchange knowledge and to share experiences working in the nexus of data science, open science, remote sensing, and the aquatic sciences.</p><p>As in previous years, accessibility for a global audience was at the forefront of both events. To prevent financial restrictions, there were no registration fees. All recordings and workshop materials were made freely available on the Open Science Framework archive (Meyer et al. <span>2021<i>b</i></span>; https://osf.io/682v5/) for asynchronous viewing and access following the event. Having videos subtitled helped overcome language barriers, allowing attendees to translate subtitles from English into their preferred language using available software. Relative to the 50 countries represented in the 2021 and 2022 workshop and summit (Meyer et al. <span>2021<i>a</i></span>, <span>2022</span>), the 2023 workshop and summit experienced an expansion in global representation, with registrants from more than 60 countries. The most represented countries included the United States (42% of registrants), Canada (8.2%), Nigeria (8.2%), Germany (5%), and Brazil (3.8%). The majority of registrants from newly represented countries were largely located in the Caribbean. With respect to career-stage, most participants identified as being in early career positions (i.e., graduate students and post-doctoral researchers; ~ 57%).</p><p>Leading up to the 2023 summit, the leadership team began a period of restructuring, a process aimed to usher in fresh perspectives and formalize the group as a community of practice (Fig. 1). This restructuring included an expansion of the leadership teams, including a steering team, a summit team, a workshop team, and an external advisory team. This expansion was realized in part to further establish the growing AEMON-J and DSOS communities, as well as enable clearer succession paths, new leadership opportunities, and organizational sustainability. The steering team, as highlighted in Fig. 1, will be instrumental in advising long-term development and goals, ensuring the community can move past short-term planning for individual summits to envision and achieve long-term goals. As the combined AEMON-J + DSOS organizing teams strive to be composed of early career researchers, this long-term planning is crucial for the broader community. To involve community members in the strategic development, a listening session was organized as a part of the 2023 summit. The goal of the listening session was to receive feedback from community members on what they appreciated about the workshops and summit. By engaging community feedback, the DSOS and AEMON-J leadership teams sought to create a more indelible mark in the nexus of data science, open science, as well as the larger aquatic sciences community by keeping the diversity, equity, inclusion, and accessibility of the larger community of practice at the forefront.</p><p>The AEMON-J “Hacking Limnology” workshop series ran during the first three days of the week. The goals of the workshops were to introduce early career scientists to various open datasets and to provide coding skills necessary to access and work with the data. The structure of the workshops was similar to previous years (Meyer et al., <span>2022</span>; Meyer et al., <span>2021<i>a</i></span>,<span>\\n <i>b</i></span>). For each day, a pre-recorded introductory video was made available to watch the week before the workshop, so participants could familiarize themselves with the fundamental concepts needed. A pre-recorded, 15-minute keynote presentation was live streamed, followed by a live question-and-answer session with both the introductory and keynote speakers. After a short break, the bulk of each workshop consisted of a two-hour, live coding session, where attendees were encouraged to live code along on their own machines. Each day concluded with a virtual social hour, during which attendees could ask further questions, network, and discuss future collaborations.</p><p>As in past years, each day had a specific theme. The theme for the first day was “Remote Sensing” and focused on how satellite-based observations, coupled with machine learning, can be used to monitor water quality over large spatiotemporal scales (Lehmann et al., <span>2023</span>). The theme of the second day was “Ecological Forecasting” and focused on the Ecological Forecasting Initiative's National Ecological Observatory Network Ecological Forecast Challenge (Thomas et al., <span>2023</span>), aimed at generating real-time forecasts of water temperature and dissolved oxygen in freshwater lakes across the continental United States. The theme of the third day was “Catchment Modeling” and focused on the MacroSheds dataset (Vlah et al., <span>2023</span>), which contains discharge and chemistry data from hundreds of watersheds and can be used to estimate solute fluxes.</p><p>All workshop materials (introductory and plenary videos, recording of live coding sessions, links to Github repositories with R code) are archived and freely available on the Open Science Framework repository (Meyer et al., <span>2021<i>b</i></span>; https://osf.io/682v5/), where they can serve as useful training material for independent study as well as organized graduate training (Table 1).</p><p>The 4<sup>th</sup> Virtual Summit for Incorporating Data Science and Open Science in the Aquatic Sciences (DSOS23) ran 27–28 July 2023 and featured 17 speakers who presented on the various ways they engaged in the nexus of data science, open science, and the aquatic sciences. The talks were divided into four sessions: “Big Data,” “Data Intensive Models,” “Applications of Open Science,” and, new this year, “Remote Sensing of Aquatic Environments”. Similar to previous years, 4–5 pre-recorded 10-minute talks were streamed sequentially, followed by a 20-minute live Q&A session moderated by organizers. The Q&A session was entirely in English, although live captions could be generated during the session with dictation software. As in the case of the Hacking Limnology workshops, talks include subtitles and are archived in the Open Science Framework repository (Meyer et al., <span>2021<i>c</i></span>). Topics within the sessions ranged from metagenomic sequencing to modeling of lake evaporation, runoff-driven soil erosion, optimal stream gage placement, phytoplankton succession, lake metabolism, as well as satellite-derived water quality estimates and community science earth observations. Each presentation highlighted the importance of access and maintenance of open data as well as reproducible science.</p><p>The summit included a career panel highlighting careers in data science and open science. Panelists included Joshua Fisher (Hydrosat and Chapman University), Stephen Kennedy (UrbanFootprint), Roxane Maranger (University of Montreal), Anika Pyle (Colorado State University), and Emily Read (U.S. Geological Survey). This group spanned a wide range of careers, perspectives, and approaches to the data-intensive sciences, and many focused on the importance of data visualization to increase accessibility and develop common ground with interdisciplinary work. Discussion included advice that panelists would tell their former selves, perspectives on leading interdisciplinary teams, suggestions for being creative in data visualization and interpretation, and strategies for keeping data visualization fun and innovative.</p><p>The summit also included a community listening session, where members of the DSOS community could share their experiences with the present and past summits. The three main goals of the listening session were to identify (1) why participants come to Hacking Limnology and DSOS, (2) what participants wish existed or considered unnecessary, and (3) who might be interested in leadership roles for the community. Approximately, 30 community members outside of the organizing committee contributed feedback. They highlighted the unique format, pre-recorded and captioned videos, the welcoming community, accessible workshops, and ambitious young researchers as reasons why they decided to join the summit. A challenge for participants was accessible time zones, especially for those located in Australia and Asia.</p><p>Just like previous workshops and summits, the AEMON-J Hacking Limnology Workshop and DSOS23 attracted wide interest and earned overwhelmingly positive feedback from the community. Yet, much like the 2022 workshops and summit, synchronous engagement was lower than events in 2020 and 2021. While over 550 people registered for the combined workshops and summit events, approximately 100 registrants (~ 18%) engaged synchronously each day. This decrease from ~ 22% in 2020 and 2021 to ~ 18% in 2022 and 2023 possibly stems from the decline of restrictions associated with the COVID-19 pandemic, namely the increase in face-to-face conferences and workshops. We also observed declining attendance through the week, potentially reflecting a need to balance regular work requirements with a week-long virtual meeting.</p><p>Admittedly, these same challenges will likely continue to be common for most virtual events, and so the organizational team is committed to striking a balance between in-person and synchronous, virtual engagement. For example, a potential opportunity includes coordinating events with in-person meetings, while still streaming the event virtually to enable worldwide participation. In-person meetings can build on the momentum generated by virtual DSOS and AEMON-J events as well as the in-person social hours organized at the Joint Aquatic Sciences Meeting in 2022 and the ASLO 2023 Meeting. Also, by distributing events throughout the year and empowering community members to self-organize their own events, the organizational team is keen to create opportunities for engagement beyond just the Hacking Limnology workshops and virtual summit. The organizational team encourages those interested in joining the network or organizing potential workshops to contact an organizational team member directly (https://aquaticdatasciopensci.github.io/info/).</p><p>With the growth and potential for the combined AEMON-J and DSOS community, the organizational team is encouraged by the breadth and number of community members interested in realizing this growth. Numerous community members expressed interest in helping with social media presence, organizing workshops, and finding speakers. Likewise, the newly formed Advisory Team is intended to increase the footprint of AEMON-J and DSOS throughout the environmental sciences, thereby enabling new connections and collaborations, as well as longer-term visions. Furthermore, the increasing number of first-year organizational team members means that new ideas, topics, and initiatives can push forward, while also allowing founding members to focus on the sustainability of the larger community and provide institutional memory where necessary.</p>\",\"PeriodicalId\":40008,\"journal\":{\"name\":\"Limnology and Oceanography Bulletin\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-10-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1002/lob.10607\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Limnology and Oceanography Bulletin\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/lob.10607\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Limnology and Oceanography Bulletin","FirstCategoryId":"1085","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/lob.10607","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
湖沼学和海洋学简报:早期会议重点介绍了黑客湖沼学研讨会和DSOS23;为数据科学、开放科学和水生科学的联系培养劳动力迈克尔·f·迈耶,通讯作者迈克尔·f·迈耶[email protected] orcid.org/0000-0002-8034-9434美国威斯康辛州麦迪逊市美国地质调查局搜索本作者的更多论文Merritt E. Harlan, Merritt E. Harlan orcid.org/0000-0002-4019-4888美国科罗拉多州丹佛市美国地质调查局搜索本作者的更多论文robert T. Hensley,Robert T. Hensley orcid.org/0000-0001-8542-087X美国科罗拉多州博尔德市巴特尔市国家生态观测站网络搜索本作者的更多论文orcid.org/0000-0002-1339-3646荷兰瓦赫宁根市荷兰生态研究所搜索本作者的更多论文Nahit S. Börekçi, Nahit S. Börekçi orcid.org/0000-0003-1124-1013 Mersin University, Mersin, trkir搜索本作者的更多论文tuba Bucak,Tuba Bucak orcid.org/0000-0002-6710-0423丹麦奥胡斯大学搜索本作者的更多论文Alli N. Cramer, Alli N. Cramer orcid.org/0000-0002-0356-5782华盛顿大学,星期五港,华盛顿州,美国搜索本作者的更多论文Johannes Feldbauer, Johannes Feldbauer orcid.org/0000-0002-8238-5375 Technische Universität德累斯顿,德累斯顿,德国搜索本作者的更多论文robert Ladwig,罗伯特·拉德维格orcid.org/0000-0001-8443-1999美国威斯康辛大学麦迪逊分校搜索本作者的更多论文Jorrit P. Mesman, Jorrit P. Mesman orcid.org/0000-0002-4319-260X瑞典乌普萨拉大学搜索本作者的更多论文Isabella A. Oleksy, Isabella A. Oleksy orcid.org/0000-0003-2572-5457美国科罗拉多大学博尔德分校搜索本作者的更多论文rachel M. Pilla,Rachel M. Pilla orcid.org/0000-0001-9156-9486橡树岭国家实验室,田纳西州橡树岭,美国搜索本文作者的更多论文orcid.org/0000-0002-3870-405X美国地质调查局,加利福尼亚州旧金山搜索本文作者的更多论文isa Calamita, Elisa Calamita orcid.org/0000-0002-2614-2942 eawg, d<e:1>本多夫,瑞士搜索本文作者的更多论文nicholas J. Gubbins,Nicholas J. Gubbins orcid.org/0000-0003-0688-3767科罗拉多州柯林斯堡科罗拉多州立大学,美国搜索本文作者的更多论文Mary E. Lofton, Mary E. Lofton orcid.org/0000-0003-3270-1330弗吉尼亚理工大学,弗吉尼亚州布莱克斯堡,美国搜索本文作者的更多论文Daniel A. Maciel, Daniel A. Maciel orcid.org/0000-0003-4543-5908国家空间研究所,巴西圣保罗<e:1> o jos<s:1> dos Campos搜索本文作者的更多论文Nicholas S. Marzolf,Nicholas S. Marzolf orcid.org/0000-0001-9146-1643杜克大学,达勒姆,北卡罗来纳州,美国搜索本作者的更多论文Freya Olsson, Freya Olsson orcid.org/0000-0002-0483-4489弗吉尼亚理工大学,布莱克斯堡,弗吉尼亚州,美国搜索本作者的更多论文Audrey N. Thellman, Audrey N. Thellman orcid.org/0000-0003-3716-6664杜克大学,达勒姆,北卡罗来纳州,美国搜索本作者的更多论文r。Quinn Thomas, R. Quinn Thomas orcid.org/0000-0003-1282-7825弗吉尼亚理工大学,布莱克斯堡,弗吉尼亚州,美国搜索作者的更多论文Michael J. Vlah, Michael J. Vlah orcid.org/0000-0002-6260-2416杜克大学,达勒姆,北卡罗来纳州,美国搜索作者的更多论文Michael F. Meyer,通讯作者Michael F. Meyer [email protected] orcid.org/0000-0002-8034-9434美国地质调查局,麦迪逊,威斯康星州,美国搜索作者的更多论文merritt E. Harlan,Merritt E. Harlan orcid.org/0000-0002-4019-4888美国科罗拉多州丹佛市美国地质调查局搜索本作者的更多论文Robert T. Hensley, Robert T. Hensley orcid.org/0000-0001-8542-087X美国科罗拉多州博尔德市巴特尔市国家生态观测网络搜索本作者的更多论文詹清,詹清orcid.org/0000-0002-1339-3646荷兰瓦赫宁根生态研究所搜索本作者的更多论文nahit S. Börekçi,Nahit S. Börekçi orcid.org/0000-0003-1124-1013梅尔辛大学,梅尔辛,丹麦rkisearch更多作者的论文Tuba buak, Tuba buak orcid.org/0000-0002-6710-0423丹麦奥胡斯大学搜索更多作者的论文Alli N. Cramer, Alli N. Cramer orcid.org/0000-0002-0356-5782华盛顿大学,星期五港,华盛顿州,美国搜索更多作者的论文Johannes Feldbauer, Johannes Feldbauer orcid.org/0000-0002-8238-5375 Technische Universität德累斯顿,德累斯顿,德累斯顿,德国搜索本作者的更多论文Robert Ladwig, Robert Ladwig orcid.org/0000-0001-8443-1999美国威斯康辛大学麦迪逊分校搜索本作者的更多论文Jorrit P. Mesman, Jorrit P. Mesman orcid.org/0000-0002-4319-260X瑞典乌普萨拉大学搜索本作者的更多论文Isabella A. Oleksy, Isabella A. Oleksy orcid http://www.0000-0003-2572-5457科罗拉多大学博尔德分校,博尔德,CO,美国搜索本文作者的更多论文Rachel M. Pilla, Rachel M. Pilla orcid.org/0000-0001-9156-9486橡树岭国家实验室,田纳西州橡树岭,美国搜索本文作者的更多论文Jacob A. Zwart, Jacob A. Zwart orcid.org/0000-0002-3870-405X美国地质调查局,旧金山,CA,美国搜索本文作者的更多论文isa Calamita, Elisa Calamita orcid.org/0000-0002-2614-2942 eawg, d<s:1>本多夫,瑞士搜索本作者的更多论文Nicholas J. Gubbins, Nicholas J. Gubbins orcid.org/0000-0003-0688-3767美国科罗拉多州柯林斯堡科罗拉多州立大学搜索本作者的更多论文Mary E. Lofton, Mary E. Lofton orcid.org/0000-0003-3270-1330弗吉尼亚州布莱克斯堡弗吉尼亚理工大学搜索本作者的更多论文Daniel A. Maciel, Daniel A. Maciel orcid.org/0000-0003-4543-5908国家空间研究所,<e:1> o jos<s:1> dos Campos, <e:1> o Paulo,巴西搜索本文作者的更多论文Nicholas S. Marzolf, Nicholas S. Marzolf orcid.org/0000-0001-9146-1643美国北卡罗来纳州达勒姆杜克大学搜索本文作者的更多论文Freya Olsson, Freya Olsson orcid.org/0000-0002-0483-4489弗吉尼亚州布莱克斯堡弗吉尼亚理工大学搜索本文作者的更多论文Audrey N. Thellman, Audrey N. Thellman orcid.org/0000-0003-3716-6664美国北卡罗来纳州达勒姆杜克大学搜索本文作者的更多论文r。Quinn Thomas, R. Quinn Thomas orcid.org/0000-0003-1282-7825弗吉尼亚州布莱克斯堡弗吉尼亚理工大学,美国搜索本作者的更多论文Michael J. Vlah, Michael J. Vlah orcid.org/0000-0002-6260-2416杜克大学,北卡罗来纳州达勒姆,美国搜索本作者的更多论文首次发表:2023年10月20日https://doi.org/10.1002/lob.10607 Michael F. Meyer, Merritt E. Harlan, Robert T. Hensley和Qing Zhan贡献相同,并被列为共同第一作者。阅读全文taboutpdf ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare给accessShare全文accessShare全文accessShare请查看我们的使用条款和条件,并勾选下面的框来分享文章的全文版本。我已经阅读并接受了Wiley在线图书馆使用共享链接的条款和条件,请使用下面的链接与您的朋友和同事分享本文的全文版本。学习更多的知识。复制URL共享链接共享一个emailfacebooktwitterlinkedinreddit微信参考lehman, M. K,和其他人。2023. gloria -全球代表性的水质光学传感高光谱原位数据集。科学。数据10:100。doi: 10.1038 / s41597 - 023 - 01973 - y。迈耶,M. F.和兹瓦特,J. A. 2020。虚拟峰会:将数据科学和开放科学纳入水产研究。Limnol。Oceanogr。牛。29:144-146。doi: 10.1002 / lob.10411Meyer, m.f.等。2021 a。虚拟成长的烦恼:在全球大流行期间组织虚拟讲习班、首脑会议、会议和网络活动的初步经验教训。Limnol。Oceanogr。牛:1-11。doi: 10.1002 / lob.10431。迈耶,m.f.,和其他人,2021b。AEMON-J“黑客湖沼学”系列研讨会和虚拟峰会:将数据科学和开放科学纳入水产研究。Limnol。Oceanogr。牛,30,140-143。doi: 10.1002 / lob.10475迈耶,M.,和其他人。2021 c。AEMON-J/DSOS档案:“黑客湖沼学”研讨会+水产研究数据科学与开放科学虚拟峰会。doi: 10.17605 / OSF.IO / 682 v5。Meyer, m.f.等。2022. 黑客湖沼学研讨会和DSOS22:为数据科学、开放科学和水生科学的联系创建一个实践社区。Limnol。Oceanogr。牛,31:123-126。doi: 10.1002 / lob.10525。托马斯,r.q.和其他人。2023. NEON生态预测挑战。前面。生态。环境,21:112-113。doi: 10.1002 / fee.2616。h, M. J., S. Rhea, E. S. Bernhardt, W. Slaughter, N. Gubbins, A. G. DelVecchia, A. Thellman, M. R. V. Ross。2023。大流域:综合小流域生态系统研究的长期生物地球化学、水文气候和地理空间数据。Limnol。Oceanogr。左8:419-452。doi: 10.1002 / lol2.10325。在问题包含之前的早期视图在线版本的记录参考信息 此外,通过在全年开展活动并授权社区成员自行组织活动,组织团队热衷于创造参与机会,而不仅仅局限于 "黑客 Limnology "研讨会和虚拟峰会。组织团队鼓励有兴趣加入网络或组织潜在研讨会的人员直接联系组织团队成员 (https://aquaticdatasciopensci.github.io/info/)。随着 AEMON-J 和 DSOS 合并社区的发展和潜力,组织团队对有兴趣实现这一发展的社区成员的广度和数量感到鼓舞。许多社区成员都表示有兴趣在社交媒体、组织研讨会和寻找演讲者方面提供帮助。同样,新成立的顾问团队旨在扩大 AEMON-J 和 DSOS 在整个环境科学领域的影响力,从而建立新的联系和合作,并实现更长远的愿景。此外,第一年组织团队成员人数的增加意味着新的想法、主题和倡议可以向前推进,同时也允许创始成员关注更大社区的可持续性,并在必要时提供机构记忆。
Hacking Limnology Workshops and DSOS23: Growing a Workforce for the Nexus of Data Science, Open Science, and the Aquatic Sciences
The 3rd Aquatic Ecosystem MOdeling Network—Junior (AEMON-J) Hacking Limnology Workshop and 4th Virtual Summit: Incorporating Data Science and Open Science in the Aquatic Sciences (DSOS) took place 24–28 July 2023. This joint event followed a similar structure to previous years, comprising three days of workshops followed by two days of the virtual summit (Meyer and Zwart 2020; Meyer et al. 2021a, 2022). During the week, over 100 aquatic science practitioners and enthusiasts gathered to exchange knowledge and to share experiences working in the nexus of data science, open science, remote sensing, and the aquatic sciences.
As in previous years, accessibility for a global audience was at the forefront of both events. To prevent financial restrictions, there were no registration fees. All recordings and workshop materials were made freely available on the Open Science Framework archive (Meyer et al. 2021b; https://osf.io/682v5/) for asynchronous viewing and access following the event. Having videos subtitled helped overcome language barriers, allowing attendees to translate subtitles from English into their preferred language using available software. Relative to the 50 countries represented in the 2021 and 2022 workshop and summit (Meyer et al. 2021a, 2022), the 2023 workshop and summit experienced an expansion in global representation, with registrants from more than 60 countries. The most represented countries included the United States (42% of registrants), Canada (8.2%), Nigeria (8.2%), Germany (5%), and Brazil (3.8%). The majority of registrants from newly represented countries were largely located in the Caribbean. With respect to career-stage, most participants identified as being in early career positions (i.e., graduate students and post-doctoral researchers; ~ 57%).
Leading up to the 2023 summit, the leadership team began a period of restructuring, a process aimed to usher in fresh perspectives and formalize the group as a community of practice (Fig. 1). This restructuring included an expansion of the leadership teams, including a steering team, a summit team, a workshop team, and an external advisory team. This expansion was realized in part to further establish the growing AEMON-J and DSOS communities, as well as enable clearer succession paths, new leadership opportunities, and organizational sustainability. The steering team, as highlighted in Fig. 1, will be instrumental in advising long-term development and goals, ensuring the community can move past short-term planning for individual summits to envision and achieve long-term goals. As the combined AEMON-J + DSOS organizing teams strive to be composed of early career researchers, this long-term planning is crucial for the broader community. To involve community members in the strategic development, a listening session was organized as a part of the 2023 summit. The goal of the listening session was to receive feedback from community members on what they appreciated about the workshops and summit. By engaging community feedback, the DSOS and AEMON-J leadership teams sought to create a more indelible mark in the nexus of data science, open science, as well as the larger aquatic sciences community by keeping the diversity, equity, inclusion, and accessibility of the larger community of practice at the forefront.
The AEMON-J “Hacking Limnology” workshop series ran during the first three days of the week. The goals of the workshops were to introduce early career scientists to various open datasets and to provide coding skills necessary to access and work with the data. The structure of the workshops was similar to previous years (Meyer et al., 2022; Meyer et al., 2021a,b). For each day, a pre-recorded introductory video was made available to watch the week before the workshop, so participants could familiarize themselves with the fundamental concepts needed. A pre-recorded, 15-minute keynote presentation was live streamed, followed by a live question-and-answer session with both the introductory and keynote speakers. After a short break, the bulk of each workshop consisted of a two-hour, live coding session, where attendees were encouraged to live code along on their own machines. Each day concluded with a virtual social hour, during which attendees could ask further questions, network, and discuss future collaborations.
As in past years, each day had a specific theme. The theme for the first day was “Remote Sensing” and focused on how satellite-based observations, coupled with machine learning, can be used to monitor water quality over large spatiotemporal scales (Lehmann et al., 2023). The theme of the second day was “Ecological Forecasting” and focused on the Ecological Forecasting Initiative's National Ecological Observatory Network Ecological Forecast Challenge (Thomas et al., 2023), aimed at generating real-time forecasts of water temperature and dissolved oxygen in freshwater lakes across the continental United States. The theme of the third day was “Catchment Modeling” and focused on the MacroSheds dataset (Vlah et al., 2023), which contains discharge and chemistry data from hundreds of watersheds and can be used to estimate solute fluxes.
All workshop materials (introductory and plenary videos, recording of live coding sessions, links to Github repositories with R code) are archived and freely available on the Open Science Framework repository (Meyer et al., 2021b; https://osf.io/682v5/), where they can serve as useful training material for independent study as well as organized graduate training (Table 1).
The 4th Virtual Summit for Incorporating Data Science and Open Science in the Aquatic Sciences (DSOS23) ran 27–28 July 2023 and featured 17 speakers who presented on the various ways they engaged in the nexus of data science, open science, and the aquatic sciences. The talks were divided into four sessions: “Big Data,” “Data Intensive Models,” “Applications of Open Science,” and, new this year, “Remote Sensing of Aquatic Environments”. Similar to previous years, 4–5 pre-recorded 10-minute talks were streamed sequentially, followed by a 20-minute live Q&A session moderated by organizers. The Q&A session was entirely in English, although live captions could be generated during the session with dictation software. As in the case of the Hacking Limnology workshops, talks include subtitles and are archived in the Open Science Framework repository (Meyer et al., 2021c). Topics within the sessions ranged from metagenomic sequencing to modeling of lake evaporation, runoff-driven soil erosion, optimal stream gage placement, phytoplankton succession, lake metabolism, as well as satellite-derived water quality estimates and community science earth observations. Each presentation highlighted the importance of access and maintenance of open data as well as reproducible science.
The summit included a career panel highlighting careers in data science and open science. Panelists included Joshua Fisher (Hydrosat and Chapman University), Stephen Kennedy (UrbanFootprint), Roxane Maranger (University of Montreal), Anika Pyle (Colorado State University), and Emily Read (U.S. Geological Survey). This group spanned a wide range of careers, perspectives, and approaches to the data-intensive sciences, and many focused on the importance of data visualization to increase accessibility and develop common ground with interdisciplinary work. Discussion included advice that panelists would tell their former selves, perspectives on leading interdisciplinary teams, suggestions for being creative in data visualization and interpretation, and strategies for keeping data visualization fun and innovative.
The summit also included a community listening session, where members of the DSOS community could share their experiences with the present and past summits. The three main goals of the listening session were to identify (1) why participants come to Hacking Limnology and DSOS, (2) what participants wish existed or considered unnecessary, and (3) who might be interested in leadership roles for the community. Approximately, 30 community members outside of the organizing committee contributed feedback. They highlighted the unique format, pre-recorded and captioned videos, the welcoming community, accessible workshops, and ambitious young researchers as reasons why they decided to join the summit. A challenge for participants was accessible time zones, especially for those located in Australia and Asia.
Just like previous workshops and summits, the AEMON-J Hacking Limnology Workshop and DSOS23 attracted wide interest and earned overwhelmingly positive feedback from the community. Yet, much like the 2022 workshops and summit, synchronous engagement was lower than events in 2020 and 2021. While over 550 people registered for the combined workshops and summit events, approximately 100 registrants (~ 18%) engaged synchronously each day. This decrease from ~ 22% in 2020 and 2021 to ~ 18% in 2022 and 2023 possibly stems from the decline of restrictions associated with the COVID-19 pandemic, namely the increase in face-to-face conferences and workshops. We also observed declining attendance through the week, potentially reflecting a need to balance regular work requirements with a week-long virtual meeting.
Admittedly, these same challenges will likely continue to be common for most virtual events, and so the organizational team is committed to striking a balance between in-person and synchronous, virtual engagement. For example, a potential opportunity includes coordinating events with in-person meetings, while still streaming the event virtually to enable worldwide participation. In-person meetings can build on the momentum generated by virtual DSOS and AEMON-J events as well as the in-person social hours organized at the Joint Aquatic Sciences Meeting in 2022 and the ASLO 2023 Meeting. Also, by distributing events throughout the year and empowering community members to self-organize their own events, the organizational team is keen to create opportunities for engagement beyond just the Hacking Limnology workshops and virtual summit. The organizational team encourages those interested in joining the network or organizing potential workshops to contact an organizational team member directly (https://aquaticdatasciopensci.github.io/info/).
With the growth and potential for the combined AEMON-J and DSOS community, the organizational team is encouraged by the breadth and number of community members interested in realizing this growth. Numerous community members expressed interest in helping with social media presence, organizing workshops, and finding speakers. Likewise, the newly formed Advisory Team is intended to increase the footprint of AEMON-J and DSOS throughout the environmental sciences, thereby enabling new connections and collaborations, as well as longer-term visions. Furthermore, the increasing number of first-year organizational team members means that new ideas, topics, and initiatives can push forward, while also allowing founding members to focus on the sustainability of the larger community and provide institutional memory where necessary.
期刊介绍:
All past issues of the Limnology and Oceanography Bulletin are available online, including its predecessors Communications to Members and the ASLO Bulletin. Access to the current and previous volume is restricted to members and institutions with a subscription to the ASLO journals. All other issues are freely accessible without a subscription. As part of ASLO’s mission to disseminate and communicate knowledge in the aquatic sciences.