黑龙江地区栽培大豆微卫星与农业性状的关联问题

IF 0.2 Q4 CHEMISTRY, MULTIDISCIPLINARY Izvestiya Vuzov-Prikladnaya Khimiya i Biotekhnologiya Pub Date : 2023-09-30 DOI:10.21285/2227-2925-2023-13-3-425-433
O. N. Bondarenko, P. D. Timkin, L. E. Ivachenko, A. A. Blinova, A. A. Penzin
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引用次数: 0

摘要

本研究评价了微卫星基因座长度与有价值农业性状之间的相关强度。为了标记大豆品种的遗传系统,使用现成的试剂盒分离DNA,然后将制造的反应混合物进行标准PCR。共使用15对引物对全俄大豆研究所选育的18个品种进行分析。8个样品(Satt1、Satt2、Satt5、Satt9、Soyhsp176、Satt681、Satt141和Satt181)特异性最强,完全适合用于大豆基因型的鉴定和认证;但是,示例Sat_263仅部分适用。通过在NCBI和soybase数据库中查找简单重复序列(SSRs)与数量性状位点(qtl)的关联,确定位点对农业性状可能产生的影响。为了确定不同属性与基因座长度之间的统计关系,通过计算Pearson 's系数进行相关分析。结果表明,Satt5、Sat_263和Satt181位点的长度与株高呈正相关,而Satt2位点的长度与株高呈负相关。相关系数(r)的平均值分别为0.485、0.55、0.435和-0.422。样品Satt1(r = 0.561)和Satt2 (r= 0.562)的长度与种子重呈正相关,而样品Satt9 (r= -0.453)和Satt681 (r= -0.527)的长度与种子重呈负相关。Satt2与潜在产量性状呈弱负相关(r = -0.321)。这表明微卫星有能力作为某一特定特征的标志。
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To the question of microsatellite associations of cultivated soybean of the Amur Oblast with agricultural traits
This prospecting study evaluated the correlation strength between the length of microsatellite loci and valuable agricultural traits. For labeling the genetic systems of soybean varieties, DNA was isolated using a ready-made kit followed by subjecting the manufactured reaction mixture to standard PCR. In total, 15 primer pairs were used to analyze 18 varieties of the All-Russian Soybean Research Institute selection. Eight samples (Satt1, Satt2, Satt5, Satt9, Soyhsp176, Satt681, Satt141 and Satt181) were the most specific and fully suitable for the identification and certification of available soybean genotypes; however, sample Sat_263 was only partially applicable. The possible influence of loci on agricultural traits was determined by searching for associations of simple sequence repeats (SSRs) with quantitative trait loci (QTLs) in the NCBI and soybase databases. To identify the statistical relationship between different attributes and loci lengths, a correlation analysis was performed by calculating Pearson’s coefficient. This analysis revealed a direct relationship between the length of Satt5, Sat_263 and Satt181 loci and plant height, with an inverse relationship being observed in the case of Satt2. The mean value of the correlation coefficient (r) comprised 0.485, 0.55, 0.435 and -0.422, respectively. Samples Satt1(r = 0.561) and Satt2 (r = 0.562) indicate a direct correlation between their length and plant seed weight, while an inverse correlation was established in the case of Satt9 (r= -0.453) and Satt681 (r= -0.527). A weak inverse correlation was found with the trait of potential yield with Satt2 (r = -0.321). This indicates the ability of microsatellites to act as a marker of a particular trait.
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自引率
50.00%
发文量
63
审稿时长
12 weeks
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