肠系膜白菌IBUN 91.2.98菌株葡聚糖酶的硅晶分析。

IF 2.3 Q3 BIOCHEMICAL RESEARCH METHODS Bioinformatics and Biology Insights Pub Date : 2023-11-28 eCollection Date: 2023-01-01 DOI:10.1177/11779322231212751
Luisa Alejandra García Galindo, Martha Margarita González, Jairo Alonso Cerón Salamanca, Sonia Amparo Ospina Sánchez
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引用次数: 0

摘要

菌株IBUN 91.2.98制备的DSR-IBUN葡聚糖酶生产时间短(4.5 h),酶活性为24.8 U/mL,纯化酶的比活性为331.6 U/mg,是同类酶的2倍。本研究的目的是生成一个结构模型,从计算机方法,可以更好地理解,从结构的角度来看,所感兴趣的酶获得的活性,这是继续其研究和工业应用的关键。为此,我们翻译了dsr_IBUN基因的核苷酸序列。利用DSR-IBUN的初级结构,建立了物理化学参数的计算机预测、可能的亚细胞定位、信号肽的存在、结构域和功能结构基序的定位。随后,对其二级和三级结构进行了预测,并利用Swiss-Model构建了所研究葡聚糖蔗糖酶的同源性模型,并进行了仔细的模板选择。得到的模型值,全球模型质量估计(0.63),质量平均值(-1.49)和均方根偏差(0.09),使我们能够确认右旋蔗糖酶DSR-IBUN的模型具有足够的质量,可以用作该蛋白质的信息来源。
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In Silico Analysis of the Dextransucrase Obtained From Leuconostoc mesenteroides Strain IBUN 91.2.98.

The DSR-IBUN dextransucrase produced by Leuconostoc mesenteroides strain IBUN 91.2.98 has a short production time (4.5 hours), an enzymatic activity of 24.8 U/mL, and a specific activity of purified enzyme 2 times higher (331.6 U/mg) than that reported for similar enzymes. The aim of this study was to generate a structural model that, from an in silico approach, allows a better understanding, from the structural point of view, of the activity obtained by the enzyme of interest, which is key to continue with its study and industry application. For this, we translated the nucleotide sequence of the dsr_IBUN gene. With the primary structure of DSR-IBUN, the in silico prediction of physicochemical parameters, the possible subcellular localization, the presence of signal peptide, and the location of domains and functional and structural motifs of the protein were established. Subsequently, its secondary and tertiary structure were predicted and a homology model of the dextransucrase under study was constructed using Swiss-Model, performing careful template selection. The values obtained for the model, Global Model Quality Estimation (0.63), Quality Mean (-1.49), and root-mean-square deviation (0.09), allow us to affirm that the model for the enzyme dextransucrase DSR-IBUN is of adequate quality and can be used as a source of information for this protein.

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来源期刊
Bioinformatics and Biology Insights
Bioinformatics and Biology Insights BIOCHEMICAL RESEARCH METHODS-
CiteScore
6.80
自引率
1.70%
发文量
36
审稿时长
8 weeks
期刊介绍: Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.
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