线虫基因组公告:种子瘿线虫,Anguina tritici基因组草图。

IF 1.4 4区 生物学 Q2 ZOOLOGY Journal of nematology Pub Date : 2023-11-15 eCollection Date: 2023-02-01 DOI:10.2478/jofnem-2023-0031
Ashish Kumar Singh, Antara Das, Ila Joshi, Manish Kumar, Deshika Kohli, Pankaj, Kishor Gaikwad, Pradeep Kumar Jain, Anil Sirohi
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引用次数: 0

摘要

小麦线虫是文献记载的第一种植物寄生线虫,可追溯到1743年。它是造成小麦和黑麦的穗瘿病(种子瘿病)和tundu病的原因。值得注意的是,这种线虫已被观察到在无水状态下在小麦种子瘿中存活长达32年。这些特殊的特征激发了小麦小麦基因组测序的灵感。在这项研究中,我们展示了利用Illumina MiSeq平台获得的小麦小麦(A. tritici)的初始基因组草图,覆盖范围为60倍。据估计,该基因组的大小为164 Mb,包含39,965个蛋白质编码基因,GC含量为39.1%。这些基因组数据的可用性将作为未来功能生物学研究的基础,特别是对于功能至今仍未知的基因。
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Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici.

Anguina tritici is the first plant-parasitic nematode described in literature, dating back to the year 1743. It is responsible for causing earcockle (seed gall) and tundu diseases in wheat and rye. Notably, this nematode has been observed to survive in an anhydrobiotic state for up to 32 years within wheat seed galls. These exceptional characteristics have inspired the sequencing of the A. tritici genome. In this study, we present the initial draft genome of A. tritici, obtained using the Illumina MiSeq platform with coverage of 60-fold. The genome is estimated to have a size of 164 Mb and comprises 39,965 protein-coding genes, exhibiting a GC content of 39.1%. The availability of this genome data will serve as a foundation for future functional biological investigations, particularly for genes whose functions remain unknown to this day.

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来源期刊
Journal of nematology
Journal of nematology 生物-动物学
CiteScore
2.90
自引率
7.70%
发文量
40
审稿时长
14 weeks
期刊介绍: Journal of Nematology is the official technical and scientific communication publication of the Society of Nematologists since 1969. The journal publishes original papers on all aspects of basic, applied, descriptive, theoretical or experimental nematology and adheres to strict peer-review policy. Other categories of papers include invited reviews, research notes, abstracts of papers presented at annual meetings, and special publications as appropriate.
期刊最新文献
Evaluating Vacuum and Steam Heat to Eliminate Pinewood Nematodes in Naturally Infested Whole Pine Logs. Description of two new Pristionchus species from South Korea. Description and Molecular Characterization of a New Dorylaimid Nematode, Mesodorylaimus pini n. sp. (Nematoda: Dorylaimidae) from Korea. JON 63rd Meeting 2024 Park City ABSTRACTS. Nematode genome announcement: A chromosome-scale genome assembly for the Pristionchus pacificus reference mapping strain PS1843.
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