通过扩散进行球状分子交流:均质细胞聚集体之间的信号传递

Mitra Rezaei, Hamidreza Arjmandi, Mohammad Zoofaghari, Kajsa Kanebratt, Liisa Vilen, David Janzen, Peter Gennemark, Adam Noel
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摘要

最近的分子通讯(MC)研究整合了更详细的计算模型,以捕捉实际生物物理系统的动态。这项研究的重点是受球形体(常用于片上器官实验系统的三维细胞聚集体)的启发,开发MC收发器的现实模型。受球体启发而建立的 MC 收发器的现实模型--球体是有机芯片实验系统中常用的三维细胞聚集体。球体的潜在应用或模型可用于器官芯片系统中的营养物质运输、生物标记物的释放或癌症肿瘤部位对药物分子的接收,或参与信息交换的收发器纳米机械。本文考虑了一个简单的扩散 MC 系统,在该系统中,球形发射器和接收器处于无界流体环境中。这些球形天线被模拟为扩散信号分子的多孔介质,然后对它们的边界条件和有效扩散系数进行表征。此外,对于点源或球面发射器,接收球面内外的浓度格林函数(GFC)都是通过分析推导出来的,并以无穷级数表示,由基于粒子的模拟器(PBS)进行确认。根据所提供的 GFC,可以计算球形通信系统中的发射和接收信号。研究表明,接收球面的多孔结构会放大扩散信号,但同时也会分散信号,因此在多孔性和信息传输速率之间存在权衡。系统性能还通过误码率(BER)进行了评估。相反,降低发射球面的多孔性会对系统性能产生不利影响。
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Spheroidal Molecular Communication via Diffusion: Signaling Between Homogeneous Cell Aggregates
Recent molecular communication (MC) research has integrated more detailed computational models to capture the dynamics of practical biophysical systems. This research focuses on developing realistic models for MC transceivers inspired by spheroids - three-dimensional cell aggregates commonly used in organ-on-chip experimental systems. Potential applications that can be used or modeled with spheroids include nutrient transport in an organ-on-chip system, the release of biomarkers or reception of drug molecules by a cancerous tumor site, or transceiver nanomachines participating in information exchange. In this paper, a simple diffusive MC system is considered where a spheroidal transmitter and receiver are in an unbounded fluid environment. These spheroidal antennas are modeled as porous media for diffusive signaling molecules, then their boundary conditions and effective diffusion coefficients are characterized. Further, for either a point source or spheroidal transmitter, Green's function for concentration (GFC) outside and inside the receiving spheroid is analytically derived and formulated in terms of an infinite series and confirmed by a particle-based simulator (PBS). The provided GFCs enable computation of the transmitted and received signals in the spheroidal communication system. This study shows that the porous structure of the receiving spheroid amplifies diffusion signals but also disperses them, thus there is a trade-off between porosity and information transmission rate. Also, the results reveal that the porous arrangement of the transmitting spheroid not only disperses the received signal but also attenuates it. System performance is also evaluated in terms of bit error rate (BER). Decreasing the porosity of the receiving spheroid is shown to enhance system performance. Conversely, reducing the porosity of the transmitting spheroid can adversely affect system performance.
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