全面分析羊毛弯曲度不同的山羊皮肤中的环状 RNA 表达谱和 circRNA-miRNA-mRNA 网络

Yingxiao Su, Zhanqiang Zhao, Zhanfa Liu, Xiaobo Li, Qian Chen, Y. Pu, Lin Jiang, Xiao-hong He, Yuehui Ma, Qianjun Zhao
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摘要

羊毛弯曲度是中卫山羊毛最宝贵的特征之一。随着山羊的生长,毛度逐渐减小,这对羊毛的质量和市场价值有重大影响。环状RNA (Circular RNA, circRNAs)是一类非编码RNA,在动物生长发育过程中发挥着重要作用。然而,circrna在中卫山羊羊毛弯曲中的表达和功能尚不清楚。在我们的研究中,我们使用RNA‐seq对中卫山羊皮肤在两个发育阶段表现出不同曲率羊毛表型的circRNA表达谱进行了分析。总共鉴定出12,682个circrna和158个差异表达circrna (DE circrna)。KEGG分析表明,DE circRNAs的宿主基因在Ras、JAK/STAT5和cAMP信号通路中显著富集,可能影响羊毛弯曲度。我们进一步使用qRT - PCR验证了5个circrna,结果与测序结果一致。功能验证实验表明circRNA8782调节成纤维细胞增殖。此外,我们构建了一个调控竞争内源性RNA (ceRNA)网络,并预测了circRNA3173‐miR‐16b‐5p‐IGF1轴参与羊毛曲率的调控。我们的结果将为揭示山羊潜在的羊毛弯曲模式的调节机制提供基础。
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Comprehensive analysis of the circular RNA expression profile and circRNA–miRNA–mRNA network in the goat skin with divergent wool curvature
Wool curvature is one of the most valuable characteristics of Zhongwei goat fur. As the goats grow, the curvature progressively diminishes, which has a substantial impact on the quality and market value of wool. Circular RNAs (circRNAs) are a class of noncoding RNA and play vital roles in animal growth and development. However, the expression and function of circRNAs in the wool curvature of Zhongwei goats are unclear. In our study, we conducted circRNA expression profiling of Zhongwei goat skin exhibiting divergent curvature wool phenotypes at two developmental stages using the RNA‐seq. In total, 12,682 circRNAs and 158 differentially expressed circRNAs (DE circRNAs) were identified. KEGG analysis illustrated that host genes of DE circRNAs were significantly enriched in the signaling pathways of Ras, JAK/STAT5, and cAMP, which might affect wool curvature. We further validated five circRNAs using qRT‐PCR, which were consistent with the sequencing results. Functional verification assay demonstrated that circRNA8782 regulated fibroblast proliferation. In addition, we constructed a regulatory competing endogenous RNA (ceRNA) network and predicted circRNA3173‐miR‐16b‐5p‐IGF1 axes involved in the regulation of wool curvature. Our result will provide the foundation for uncovering the regulatory mechanisms of underlying wool curvature patterns in goats.
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