用于预测喉癌总生存期的可解释机器学习模型

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-01-27 DOI:10.1080/00016489.2023.2301648
Rasheed Omobolaji Alabi, Alhadi Almangush, Mohammed Elmusrati, Ilmo Leivo, Antti A Mäkitie
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引用次数: 0

摘要

背景:在过去几十年中,喉鳞状细胞癌(LSCC)的死亡率并没有明显下降:我们的主要目的是比较 DeepTables 与最先进的机器学习(ML)算法(Voting ensemble、Stack ensemble 和 XGBoost)的预测性能,以对 LSCC 患者的总生存(OS)几率进行分层。此外,我们还利用全局和局部模型诊断技术提供了可解释性,从而对所开发的模型进行了补充:方法:我们对监测、流行病学和最终结果(SEER)数据库中确诊为 LSCC 的 2792 例患者进行了审查。使用SHAPLE Additive exPlanations(SHAP)技术检查了全局模型诊断的可解释性。同样,使用局部可解释模型不可知论解释(LIME)对预测进行了个别解释:结果:最先进的 ML 集合算法的性能优于 DeepTables。具体来说,所考察的集合算法显示出可比的加权接收曲线下面积分别为 76.9、76.8 和 76.1,准确率分别为 71.2%、70.2% 和 71.8%。全局可解释性方法(SHAP)表明,患者诊断时的年龄、N分期、T分期、肿瘤分级和婚姻状况是其中最重要的参数:预测 OS 的 ML 模型可作为 LSCC 患者治疗计划的辅助工具。
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Interpretable machine learning model for prediction of overall survival in laryngeal cancer.

Background: The mortality rates of laryngeal squamous cell carcinoma cancer (LSCC) have not significantly decreased in the last decades.Objectives: We primarily aimed to compare the predictive performance of DeepTables with the state-of-the-art machine learning (ML) algorithms (Voting ensemble, Stack ensemble, and XGBoost) to stratify patients with LSCC into chance of overall survival (OS). In addition, we complemented the developed model by providing interpretability using both global and local model-agnostic techniques.Methods: A total of 2792 patients in the Surveillance, Epidemiology, and End Results (SEER) database diagnosed with LSCC were reviewed. The global model-agnostic interpretability was examined using SHapley Additive exPlanations (SHAP) technique. Likewise, individual interpretation of the prediction was made using Local Interpretable Model Agnostic Explanations (LIME).Results: The state-of-the-art ML ensemble algorithms outperformed DeepTables. Specifically, the examined ensemble algorithms showed comparable weighted area under receiving curve of 76.9, 76.8, and 76.1 with an accuracy of 71.2%, 70.2%, and 71.8%, respectively. The global methods of interpretability (SHAP) demonstrated that the age of the patient at diagnosis, N-stage, T-stage, tumor grade, and marital status are among the prominent parameters.Conclusions: A ML model for OS prediction may serve as an ancillary tool for treatment planning of LSCC patients.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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