一种分布于世界各地的濒危水生植物 Brasenia schreberi 的基因组草案。

IF 1.9 Q3 GENETICS & HEREDITY BMC genomic data Pub Date : 2024-03-04 DOI:10.1186/s12863-024-01212-2
Lin-Fang Wu, Wei-Guang Zhu, En-Ping Yu, Hong-Lin Cao, Zheng-Feng Wang
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引用次数: 0

摘要

目的:Brasenia 是木贼科的单型属。其唯一的物种 B. schreberi 是一种大型水生植物,分布于世界各地。由于它需要良好的水质,因此在中国和其他国家,由于水生生境的恶化,它已濒临灭绝。石蒜的嫩叶和茎上覆盖着厚厚的粘液,具有很高的药用价值。作为一种等效的水生植物,它还可用于治理水生杂草。在此,我们介绍了其组装和注释的基因组,以帮助揭示其介导和等位底物,促进其保护:从 B. schreberi 叶组织中提取的基因组 DNA 和 RNA 使用 Nanopore 和/或 MGI 测序仪进行全基因组和 RNA 测序。测序结果为 1,055,148,839 bp,92 个等位基因,N50 为 22,379,495 bp。装配中的重复元件为 555,442,205 bp。利用 BUSCO 和 compleasm 对组装体进行的完整性评估显示,在 Eudicots 数据库中的完整性分别为 88.4% 和 90.9%,在 Embryphyta 数据库中的完整性分别为 95.4% 和 96.6%。基因注释显示有 67,747 个基因,编码 73,344 种蛋白质。
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Draft genome of Brasenia schreberi, a worldwide distributed and endangered aquatic plant.

Objectives: Brasenia is a monotypic genus in the family of Cabombaceae. The only species, B. schreberi, is a macrophyte distributed worldwide. Because it requires good water quality, it is endangered in China and other countries due to the deterioration of aquatic habitats. The young leaves and stems of B. schreberi are covered by thick mucilage, which has high medical value. As an allelopathic aquatic plant, it can also be used in the management of aquatic weeds. Here, we present its assembled and annotated genome to help shed light on medial and allelopathic substrates and facilitate their conservation.

Data description: Genomic DNA and RNA extracted from B. schreberi leaf tissues were used for whole genome and RNA sequencing using a Nanopore and/or MGI sequencer. The assembly was 1,055,148,839 bp in length, with 92 contigs and an N50 of 22,379,495 bp. The repetitive elements in the assembly were 555,442,205 bp. A completeness assessment of the assembly with BUSCO and compleasm indicated 88.4 and 90.9% completeness in the Eudicots database and 95.4 and 96.6% completeness in the Embryphyta database. Gene annotation revealed 67,747 genes that coded for 73,344 proteins.

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