Salinity shapes vertical distribution of sediment microbial community in Ebinur Lake, China

The microbial communities in saline lakes play important roles in maintaining their unique ecosystems. However, little is known about the vertical distribution of the sediment microbial communities in saline lakes. We therefore studied the vertical distribution of the sediment microbial communities and their relationships with environmental factors in Ebinur Lake, China. Our sediment cores, collected in 2018, were analyzed using Illumina MiSeq sequencing. The results indicated that microbial diversity significantly increased in the sediment core with increasing salinity. At the phylum level, the six most abundant microbes were Proteobacteria, Chloroflexi, Bacteroidetes, Firmicutes, Gemmatimonadetes and Deinococcus-Thermus, accounting for 42.9%, 10.7%, 9.6%, 5.2%, 4.6% and 3.6% of the total reads, respectively; At the genus level, the six most abundant genera were Halothiobacillus, Desulfotignum, Truepera, Salipaludibacillus, Marinobacter and Halomonas, accounting for 15.4%, 4.8%, 3.6%, 2.7%, 2.6% and 2.3% of the total reads respectively. There were significant vertical variations in microbial community composition (MCC) between upper layers and lower layers. Canonical correspondence analysis demonstrated that salinity was the dominant environmental factor affecting the vertical variation of sediment MCC. Thus, this study could greatly improve our understanding of the MCC of saline lakes in the arid and semi-arid ecosystems.