{"title":"榆叶梅(榆叶梅科)完整叶绿体基因组的表征","authors":"Haibo Li, Huimin Feng, Ping Qi, Donglin Li","doi":"10.1016/j.japb.2024.01.007","DOIUrl":null,"url":null,"abstract":"<div><p><em>Elaeocarpus glabripetalus</em> Merr. is a notable species within the <em>Elaeocarpus</em> genus, particularly in the temperate regions of China. Distinguished by its cold resistance compared to other species, it encounters challenges in accurate identification, often prone to confusion with other related species. To address this issue, we present the complete chloroplast (cp) genome of <em>E. glabripetalus</em> in this study. The cp genome was 158,144 bp in length including two inverted repeats (IRs) of 27,388 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 85,699 bp and 17,669 bp, respectively. The GC content was 37.1%. The genome encoded 135 functional genes, including 90 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that <em>E. glabripetalus</em> was clustered with other <em>Elaeocarpus</em> species and was a sister to <em>E. sylvestris</em>. This study provided the first report on the complete cp genome of <em>E. glabripetalus</em>, which is useful for further studies on species identification, germplasm conservation, and plant breeding in the <em>Elaeocarpus</em> genus and Elaeocarpaceae family.</p></div>","PeriodicalId":0,"journal":{"name":"","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-03-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2287884X24000268/pdfft?md5=4870fb86b8372a9a930b1fa3a63b2e6a&pid=1-s2.0-S2287884X24000268-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Characterization of the complete chloroplast genome of Elaeocarpus glabripetalus (Elaeocarpaceae)\",\"authors\":\"Haibo Li, Huimin Feng, Ping Qi, Donglin Li\",\"doi\":\"10.1016/j.japb.2024.01.007\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><em>Elaeocarpus glabripetalus</em> Merr. is a notable species within the <em>Elaeocarpus</em> genus, particularly in the temperate regions of China. Distinguished by its cold resistance compared to other species, it encounters challenges in accurate identification, often prone to confusion with other related species. To address this issue, we present the complete chloroplast (cp) genome of <em>E. glabripetalus</em> in this study. The cp genome was 158,144 bp in length including two inverted repeats (IRs) of 27,388 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 85,699 bp and 17,669 bp, respectively. The GC content was 37.1%. The genome encoded 135 functional genes, including 90 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that <em>E. glabripetalus</em> was clustered with other <em>Elaeocarpus</em> species and was a sister to <em>E. sylvestris</em>. This study provided the first report on the complete cp genome of <em>E. glabripetalus</em>, which is useful for further studies on species identification, germplasm conservation, and plant breeding in the <em>Elaeocarpus</em> genus and Elaeocarpaceae family.</p></div>\",\"PeriodicalId\":0,\"journal\":{\"name\":\"\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0,\"publicationDate\":\"2024-03-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2287884X24000268/pdfft?md5=4870fb86b8372a9a930b1fa3a63b2e6a&pid=1-s2.0-S2287884X24000268-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2287884X24000268\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2287884X24000268","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
Elaeocarpus glabripetalus Merr.是崖柏属中的一个重要物种,尤其是在中国温带地区。与其他物种相比,它的特点是耐寒,但在准确鉴定方面却遇到了挑战,往往容易与其他相关物种混淆。为了解决这个问题,我们在本研究中展示了E. glabripetalus的完整叶绿体(cp)基因组。cp 基因组全长 158,144 bp,包括两个长达 27,388 bp 的倒位重复序列(IR),这两个序列分别由长达 85,699 bp 的大单个拷贝(LSC)和长达 17,669 bp 的小单个拷贝(SSC)隔开。GC 含量为 37.1%。基因组编码 135 个功能基因,包括 90 个蛋白质编码基因、37 个 tRNA 基因和 8 个 rRNA 基因。系统进化分析表明,E. glabripetalus 与其他 Elaeocarpus 种类聚类,是 E. sylvestris 的姊妹种。该研究首次报道了E. glabripetalus的完整cp基因组,有助于进一步研究崖柏属和崖柏科植物的物种鉴定、种质资源保护和植物育种。
Characterization of the complete chloroplast genome of Elaeocarpus glabripetalus (Elaeocarpaceae)
Elaeocarpus glabripetalus Merr. is a notable species within the Elaeocarpus genus, particularly in the temperate regions of China. Distinguished by its cold resistance compared to other species, it encounters challenges in accurate identification, often prone to confusion with other related species. To address this issue, we present the complete chloroplast (cp) genome of E. glabripetalus in this study. The cp genome was 158,144 bp in length including two inverted repeats (IRs) of 27,388 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 85,699 bp and 17,669 bp, respectively. The GC content was 37.1%. The genome encoded 135 functional genes, including 90 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that E. glabripetalus was clustered with other Elaeocarpus species and was a sister to E. sylvestris. This study provided the first report on the complete cp genome of E. glabripetalus, which is useful for further studies on species identification, germplasm conservation, and plant breeding in the Elaeocarpus genus and Elaeocarpaceae family.