阐明酰胺衍生物增强白念珠菌抗真菌活性的结构基础:一项全面的计算研究。

In silico pharmacology Pub Date : 2024-05-30 eCollection Date: 2024-01-01 DOI:10.1007/s40203-024-00222-3
Eban L Kechi, Chioma B Ubah, Musa Runde, Aniekan E Owen, Obinna C Godfrey, Daniel C Agurokpon, Michael O Odey, Uwem O Edet, Bassey O Ekpong, Solomon O Iyam, Innocent Benjamin, Gopinath Sampathkumar
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引用次数: 0

摘要

人们一直在寻找更有效的方法来对付白色念珠菌等众所周知的病原体,这也是人们从各种渠道寻找新型先导化合物的原因。本研究旨在研究 5-(2-((5-(((1S,3R) -3-(5-乙酰氨基-1,3,4-噻二唑烷-2-基)环戊基)甲基)-1,3,4-噻二唑烷-2-基)氨基)-2-氧代乙基)-2-甲基-2、利用 DFT 方法 ωB97XD/-311 + + g(2d,2p) 对 ATCTP 进行了优化,并利用分子对接和 ADMET 研究了 ATCTP 对白色念珠菌的生物潜力。在二甲基亚砜、乙醇、气体和水中进行了几何优化,发现键长存在微小差异,键角存在较大差异。前沿分子轨道研究显示,HOMO-LUMO 能隙大小依次为 ATCTP_Gas > ATCTP_Water > ATCTP_ethanol > ATCTP_DMSO,由此推断,与乙醇和 DMSO 相比,水对化合物化学稳定性的影响最大。状态密度研究显示了相应能量峰上的电子密度贡献。根据硅药动学预测,ATCTP 不具有细胞毒性、肝毒性、免疫毒性或诱变性,但可能具有诱变性。ATCTP 与标准药物氟康唑相比,对白念珠菌天冬氨酸蛋白酶(ID:2QZX)进行了分子对接研究。与标准药物氟康唑(- 5.6 kcal/mol)相比,化合物 ATCTP 具有更高的结合亲和力(- 8.1 kcal/mol)。ATCTP 与氟康唑的结合亲和力为 - 7.2 kcal/mol,据报道超过了 2QZX 与氟康唑的结合亲和力(- 5.7 kcal/mol)。ATCTP 与羊毛甾醇 14-α-demethylase (5v5z) 的结合亲和力为 - 9.7 kcal/mol,与氟康唑+5v5z(- 8.0 kcal/mol)相比,ATCTP 与蛋白质活性位点氨基酸残基的结合亲和力为 - 9.7 kcal/mol。因此,建议将 ATCTP 作为先导化合物,以设计出更有效的新型抗念珠菌治疗化合物:
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Elucidating the structural basis for the enhanced antifungal activity of amide derivative against Candida albicans: a comprehensive computational investigation.

The continuous search for more effective options against well-known pathogens such as Candida albicans remains the rationale for the search for novel lead compounds from various sources. This study aims to investigate the chemical structure, chemical properties, of 5-(2-((5-(((1S,3R) -3-(5-acetamido-1,3,4-thiadiazolidin-2-yl) cyclopentyl) methyl)-1,3,4-thiadiazolidin-2-yl)amino)-2-oxoethyl)-2-methyl-2,3-dihydro-1H-pyrazol-3-ide designated ATCTP using DFT method ωB97XD/-311 +  + g(2d, 2p) and the biological potential of compound ATCTP against Candida albicans using molecular docking and ADMET studies. Geometry optimization was carried out in DMSO, ethanol. gas and water revealing minute discrepancies in bond length and wider differences in bond angles. Frontier molecular orbital investigations reveal HOMO-LUMO energy gap magnitude in decreasing order of ATCTP_Gas > ATCTP_Water > ATCTP_ethanol > ATCTP_DMSO inferring that water influences chemical stability of the compound the most compared to ethanol and DMSO. Density of state investigations have revealed electron density contributions at corresponding energy peaks. In silico pharmacokinetic predicts ATCTP not to be cytotoxic, hepatotoxic, immunotoxic or mutagenic but probable mutagen. Molecular docking investigation of ATCTP against aspartic proteinase of Candida albicans (ID: 2QZX) in comparison with standard drug Fluconazole. Compound ATCTP had higher binding affinity (- 8.1 kcal/mol) compared to that of the standard drug fluconazole (- 5.6 kcal/mol) which records 4 conventional hydrogen interactions compared to 2 formed in the interaction of ATCTP + 2QZX. ATCTP also reports binding affinity of - 7.2 kcal/mol which reportedly surpassed that of 2QZX interaction with fluconazole (- 5.7 kcal/mol). ATCTP binds with lanosterol14-α-demethylase (5v5z) with binding affinity of - 9.7 kcal/mol binding to active site amino acid residues of the protein compared to fluconazole + 5v5z (- 8.0 kcal/mol). ATCTP is therefore recommended to be a lead compound for the possible design of a new and more effective anti-candida therapeutic compound.

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