Xin-Yue Zhang, Yu-Qi Ye, Yan-Jun Feng, Hong-Nan Gong, Zong-Jun Du, Meng-Qi Ye
{"title":"从潮间带沉积物中分离出的 Elongatibacter sediminis gen.","authors":"Xin-Yue Zhang, Yu-Qi Ye, Yan-Jun Feng, Hong-Nan Gong, Zong-Jun Du, Meng-Qi Ye","doi":"10.1099/ijsem.0.006440","DOIUrl":null,"url":null,"abstract":"<p><p>A novel slightly halophilic, aerobic, and Gram-stain-negative strain, designated as CH-27<sup>T</sup>, was isolated during a bacterial resource investigation of intertidal sediment collected from Xiaoshi Island in Weihai, PR China. Cells of strain CH-27<sup>T</sup> were rod-shaped with widths of 0.3-0.6 µm and lengths of 2.0-11.0 µm. Strain CH-27<sup>T</sup> grew optimally at 37 °C, pH 7.0 and with 2.0 % (w/v) NaCl. Catalase activity was weakly positive and oxidase activity was positive. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain CH-27<sup>T</sup> was most related to <i>Marinihelvus fidelis</i> KCTC 92639<sup>T</sup> (93.6 %), followed by <i>Wenzhouxiangella marina</i> MCCC 1K00261<sup>T</sup> (92.0 %). Based on genome comparisons between strain CH-27<sup>T</sup> and <i>M. fidelis</i> KCTC 92639<sup>T</sup>, the average amino acid identity was 63.6 % and the percentage of conserved proteins was 48.3 %. The major cellular fatty acid of strain CH-27<sup>T</sup> (≥10 %) was iso-C<sub>15 : 0</sub> and the sole respiratory quinone was quinone-8. The polar lipids were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, and aminophospholipid. The DNA G+C content was 62.7 mol%. Based on comprehensive analysis of its phylogenetic, physiological, biochemical, and chemotaxonomic characteristics, strain CH-27<sup>T</sup> represents a novel species in a novel genus, for which the name <i>Elongatibacter sediminis</i> gen. nov., sp.nov. is proposed. The type strain is CH-27<sup>T</sup> (=MCCC 1H00480<sup>T</sup>=KCTC 8011<sup>T</sup>).</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Elongatibacter sediminis</i> gen. nov., sp. nov., isolated from intertidal sediment, and genomic comparison with all genera in the family <i>Wenzhouxiangellaceae</i>.\",\"authors\":\"Xin-Yue Zhang, Yu-Qi Ye, Yan-Jun Feng, Hong-Nan Gong, Zong-Jun Du, Meng-Qi Ye\",\"doi\":\"10.1099/ijsem.0.006440\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A novel slightly halophilic, aerobic, and Gram-stain-negative strain, designated as CH-27<sup>T</sup>, was isolated during a bacterial resource investigation of intertidal sediment collected from Xiaoshi Island in Weihai, PR China. Cells of strain CH-27<sup>T</sup> were rod-shaped with widths of 0.3-0.6 µm and lengths of 2.0-11.0 µm. Strain CH-27<sup>T</sup> grew optimally at 37 °C, pH 7.0 and with 2.0 % (w/v) NaCl. Catalase activity was weakly positive and oxidase activity was positive. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain CH-27<sup>T</sup> was most related to <i>Marinihelvus fidelis</i> KCTC 92639<sup>T</sup> (93.6 %), followed by <i>Wenzhouxiangella marina</i> MCCC 1K00261<sup>T</sup> (92.0 %). Based on genome comparisons between strain CH-27<sup>T</sup> and <i>M. fidelis</i> KCTC 92639<sup>T</sup>, the average amino acid identity was 63.6 % and the percentage of conserved proteins was 48.3 %. The major cellular fatty acid of strain CH-27<sup>T</sup> (≥10 %) was iso-C<sub>15 : 0</sub> and the sole respiratory quinone was quinone-8. The polar lipids were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, and aminophospholipid. The DNA G+C content was 62.7 mol%. Based on comprehensive analysis of its phylogenetic, physiological, biochemical, and chemotaxonomic characteristics, strain CH-27<sup>T</sup> represents a novel species in a novel genus, for which the name <i>Elongatibacter sediminis</i> gen. nov., sp.nov. is proposed. The type strain is CH-27<sup>T</sup> (=MCCC 1H00480<sup>T</sup>=KCTC 8011<sup>T</sup>).</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006440\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006440","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
Elongatibacter sediminis gen. nov., sp. nov., isolated from intertidal sediment, and genomic comparison with all genera in the family Wenzhouxiangellaceae.
A novel slightly halophilic, aerobic, and Gram-stain-negative strain, designated as CH-27T, was isolated during a bacterial resource investigation of intertidal sediment collected from Xiaoshi Island in Weihai, PR China. Cells of strain CH-27T were rod-shaped with widths of 0.3-0.6 µm and lengths of 2.0-11.0 µm. Strain CH-27T grew optimally at 37 °C, pH 7.0 and with 2.0 % (w/v) NaCl. Catalase activity was weakly positive and oxidase activity was positive. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain CH-27T was most related to Marinihelvus fidelis KCTC 92639T (93.6 %), followed by Wenzhouxiangella marina MCCC 1K00261T (92.0 %). Based on genome comparisons between strain CH-27T and M. fidelis KCTC 92639T, the average amino acid identity was 63.6 % and the percentage of conserved proteins was 48.3 %. The major cellular fatty acid of strain CH-27T (≥10 %) was iso-C15 : 0 and the sole respiratory quinone was quinone-8. The polar lipids were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, and aminophospholipid. The DNA G+C content was 62.7 mol%. Based on comprehensive analysis of its phylogenetic, physiological, biochemical, and chemotaxonomic characteristics, strain CH-27T represents a novel species in a novel genus, for which the name Elongatibacter sediminis gen. nov., sp.nov. is proposed. The type strain is CH-27T (=MCCC 1H00480T=KCTC 8011T).