Sumbal Sajid, Guoqiang Zhang, Zongyao Zhang, Yishan Lu, Lianguo Chen, Lin Cai
{"title":"Spartinivicinus poritis sp.","authors":"Sumbal Sajid, Guoqiang Zhang, Zongyao Zhang, Yishan Lu, Lianguo Chen, Lin Cai","doi":"10.1099/ijsem.0.006444","DOIUrl":null,"url":null,"abstract":"<p><p>A Gram-stain-negative, red pigment-producing, aerobic, and rod-shaped bacterial strain (A2-2<sup>T</sup>) was isolated from a bleached scleractinian coral (<i>Porites lutea</i>). Strain A2-2<sup>T</sup> grew with 1.0-7.0 % (w/v) NaCl (optimum, 3.0 %), at pH 6.0-11.0 (optimum, pH 8.0), and at 18-41 °C (optimum, 35 °C). Results of phylogenetic analysis based on 16S rRNA gene sequences suggested that strain A2-2<sup>T</sup> fell within the genus <i>Spartinivicinus</i> and was closely related to <i>Spartinivicinus ruber</i> S2-4-1H<sup>T</sup> (98.1 % sequence similarity) and <i>Spartinivicinus marinus</i> SM1973<sup>T</sup> (98.0 % sequence similarity). The predominant cellular fatty acids of strain A2-2<sup>T</sup> were C<sub>16 : 0</sub> (31.0 %), summed feature 3 (29.0 %), summed feature 8 (11.7 %), C<sub>12 : 0</sub> 3-OH (6.4 %), and C<sub>10 : 0</sub> 3-OH (5.5 %), while the major respiratory quinone was Q-9. The polar lipids mainly comprised phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and an unidentified phospholipid. The genome size of strain A2-2<sup>T</sup> was 6.8 Mb, with a G+C content of 40.2 mol%. The DNA-DNA hybridization value was 24.2 % between A2-2<sup>T</sup> and <i>S. ruber</i> S2-4-1H<sup>T</sup> and 36.9 % between A2-2<sup>T</sup> and <i>S. marinus</i> SM1973<sup>T</sup>, while the average nucleotide identity values were 80.1 and 88.8 %, respectively. Based on these findings, strain A2-2<sup>T</sup> could be recognized to represent a novel species of the genus <i>Spartinivicinus</i>, for which the name <i>Spartinivicinus poritis</i> sp. nov. is proposed. The type strain is A2-2<sup>T</sup> (=MCCC 1K08228<sup>T</sup>=KCTC 8323<sup>T</sup>).</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Spartinivicinus poritis</i> sp. nov., a red pigment-producing bacterium isolated from a scleractinian coral <i>Porites lutea</i>.\",\"authors\":\"Sumbal Sajid, Guoqiang Zhang, Zongyao Zhang, Yishan Lu, Lianguo Chen, Lin Cai\",\"doi\":\"10.1099/ijsem.0.006444\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A Gram-stain-negative, red pigment-producing, aerobic, and rod-shaped bacterial strain (A2-2<sup>T</sup>) was isolated from a bleached scleractinian coral (<i>Porites lutea</i>). Strain A2-2<sup>T</sup> grew with 1.0-7.0 % (w/v) NaCl (optimum, 3.0 %), at pH 6.0-11.0 (optimum, pH 8.0), and at 18-41 °C (optimum, 35 °C). Results of phylogenetic analysis based on 16S rRNA gene sequences suggested that strain A2-2<sup>T</sup> fell within the genus <i>Spartinivicinus</i> and was closely related to <i>Spartinivicinus ruber</i> S2-4-1H<sup>T</sup> (98.1 % sequence similarity) and <i>Spartinivicinus marinus</i> SM1973<sup>T</sup> (98.0 % sequence similarity). The predominant cellular fatty acids of strain A2-2<sup>T</sup> were C<sub>16 : 0</sub> (31.0 %), summed feature 3 (29.0 %), summed feature 8 (11.7 %), C<sub>12 : 0</sub> 3-OH (6.4 %), and C<sub>10 : 0</sub> 3-OH (5.5 %), while the major respiratory quinone was Q-9. The polar lipids mainly comprised phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and an unidentified phospholipid. The genome size of strain A2-2<sup>T</sup> was 6.8 Mb, with a G+C content of 40.2 mol%. The DNA-DNA hybridization value was 24.2 % between A2-2<sup>T</sup> and <i>S. ruber</i> S2-4-1H<sup>T</sup> and 36.9 % between A2-2<sup>T</sup> and <i>S. marinus</i> SM1973<sup>T</sup>, while the average nucleotide identity values were 80.1 and 88.8 %, respectively. Based on these findings, strain A2-2<sup>T</sup> could be recognized to represent a novel species of the genus <i>Spartinivicinus</i>, for which the name <i>Spartinivicinus poritis</i> sp. nov. is proposed. The type strain is A2-2<sup>T</sup> (=MCCC 1K08228<sup>T</sup>=KCTC 8323<sup>T</sup>).</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006444\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006444","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
Spartinivicinus poritis sp. nov., a red pigment-producing bacterium isolated from a scleractinian coral Porites lutea.
A Gram-stain-negative, red pigment-producing, aerobic, and rod-shaped bacterial strain (A2-2T) was isolated from a bleached scleractinian coral (Porites lutea). Strain A2-2T grew with 1.0-7.0 % (w/v) NaCl (optimum, 3.0 %), at pH 6.0-11.0 (optimum, pH 8.0), and at 18-41 °C (optimum, 35 °C). Results of phylogenetic analysis based on 16S rRNA gene sequences suggested that strain A2-2T fell within the genus Spartinivicinus and was closely related to Spartinivicinus ruber S2-4-1HT (98.1 % sequence similarity) and Spartinivicinus marinus SM1973T (98.0 % sequence similarity). The predominant cellular fatty acids of strain A2-2T were C16 : 0 (31.0 %), summed feature 3 (29.0 %), summed feature 8 (11.7 %), C12 : 0 3-OH (6.4 %), and C10 : 0 3-OH (5.5 %), while the major respiratory quinone was Q-9. The polar lipids mainly comprised phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and an unidentified phospholipid. The genome size of strain A2-2T was 6.8 Mb, with a G+C content of 40.2 mol%. The DNA-DNA hybridization value was 24.2 % between A2-2T and S. ruber S2-4-1HT and 36.9 % between A2-2T and S. marinus SM1973T, while the average nucleotide identity values were 80.1 and 88.8 %, respectively. Based on these findings, strain A2-2T could be recognized to represent a novel species of the genus Spartinivicinus, for which the name Spartinivicinus poritis sp. nov. is proposed. The type strain is A2-2T (=MCCC 1K08228T=KCTC 8323T).