膜形态转化的自由能计算以及对物理生物学和肿瘤学的启示。

4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Methods in enzymology Pub Date : 2024-01-01 Epub Date: 2024-04-14 DOI:10.1016/bs.mie.2024.03.028
Kshitiz Parihar, Seung-Hyun Ko, Ryan Bradley, Phillip Taylor, N Ramakrishnan, Tobias Baumgart, Wei Guo, Valerie M Weaver, Paul A Janmey, Ravi Radhakrishnan
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引用次数: 0

摘要

在本章中,我们旨在通过多尺度模型,将围绕膜曲率产生的基本分子和细胞原理与癌症中细胞信号的重新布线联系起来。我们描述了一个将信号传递与其他细胞功能(如贩运、细胞-细胞和细胞-基质粘附以及运动性)整合在一起的总体框架。我们研究方法的指导问题是:由外部刺激(包括细胞外微环境刺激)引起的细胞膜构型的物理变化如何改变贩运、信号传递和随后的细胞命运?我们通过构建基于细胞膜变形随机空间连续模型的建模框架来回答这个问题。我们将应用这一框架来探索肿瘤微环境中的贩运、信号传递和细胞命运之间的联系。在每个阶段,我们都致力于将预测结果与细胞实验联系起来。
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Free energy calculations for membrane morphological transformations and insights to physical biology and oncology.

In this chapter, we aim to bridge basic molecular and cellular principles surrounding membrane curvature generation with rewiring of cellular signals in cancer through multiscale models. We describe a general framework that integrates signaling with other cellular functions like trafficking, cell-cell and cell-matrix adhesion, and motility. The guiding question in our approach is: how does a physical change in cell membrane configuration caused by external stimuli (including those by the extracellular microenvironment) alter trafficking, signaling and subsequent cell fate? We answer this question by constructing a modeling framework based on stochastic spatial continuum models of cell membrane deformations. We apply this framework to explore the link between trafficking, signaling in the tumor microenvironment, and cell fate. At each stage, we aim to connect the results of our predictions with cellular experiments.

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来源期刊
Methods in enzymology
Methods in enzymology 生物-生化研究方法
CiteScore
2.90
自引率
0.00%
发文量
308
审稿时长
3-6 weeks
期刊介绍: The critically acclaimed laboratory standard for almost 50 years, Methods in Enzymology is one of the most highly respected publications in the field of biochemistry. Each volume is eagerly awaited, frequently consulted, and praised by researchers and reviewers alike. Now with over 500 volumes the series contains much material still relevant today and is truly an essential publication for researchers in all fields of life sciences, including microbiology, biochemistry, cancer research and genetics-just to name a few. Five of the 2013 Nobel Laureates have edited or contributed to volumes of MIE.
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