溶度积的测量揭示了低聚物和自结合在确定凝结物形成方面的相互作用。

IF 3.1 3区 生物学 Q3 CELL BIOLOGY Molecular Biology of the Cell Pub Date : 2024-09-01 Epub Date: 2024-07-24 DOI:10.1091/mbc.E24-01-0030
Aniruddha Chattaraj, Zeynep Baltaci, Steve Chung, Bruce J Mayer, Leslie M Loew, Jonathon A Ditlev
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引用次数: 0

摘要

细胞凝聚物通常由 10 到 100 种不同的相互作用分子组成。由于这些相互作用的复杂性,预测它们发生相分离的时间点非常困难。因此,我们利用实验和计算研究了一个简单的模型系统,该系统由 polySH3 和 polyPRM 组成,设计用于五价异型结合。我们测试了峰值溶解度乘积或各组分稀释相浓度的乘积是否是预测相分离开始的参数。滴定每种成分的相等总浓度表明,在实验和模型中,最大溶度积与相分离阈值大致吻合。然而,我们发现稀释相浓度的测量值包括小的低聚物和单体;因此,要对实验和模型进行定量比较,就必须在模型分析中包括小的低聚物。即使纳入了小的 polyPRM 和 polySH3 低聚物,模型也无法预测实验结果。这促使我们进行了动态光散射实验,发现了 polyPRM 的同型结合。在我们的模型中加入这种相互作用,可以再现实验观察到的不对称现象。因此,将实验与模拟进行比较可以发现,即使小的低聚物和低亲和力的同型相互作用使分析复杂化,溶解度乘积也可以预测相分离背后的相互作用。
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Measurement of solubility product reveals the interplay of oligomerization and self-association for defining condensate formation.

Cellular condensates often consist of 10s to 100s of distinct interacting molecular species. Because of the complexity of these interactions, predicting the point at which they will undergo phase separation is daunting. Using experiments and computation, we therefore studied a simple model system consisting of polySH3 and polyPRM designed for pentavalent heterotypic binding. We tested whether the peak solubility product, or the product of the dilute phase concentration of each component, is a predictive parameter for the onset of phase separation. Titrating up equal total concentrations of each component showed that the maximum solubility product does approximately coincide with the threshold for phase separation in both experiments and models. However, we found that measurements of dilute phase concentration include small oligomers and monomers; therefore, a quantitative comparison of the experiments and models required inclusion of small oligomers in the model analysis. Even with the inclusion of small polyPRM and polySH3 oligomers, models did not predict experimental results. This led us to perform dynamic light scattering experiments, which revealed homotypic binding of polyPRM. Addition of this interaction to our model recapitulated the experimentally observed asymmetry. Thus, comparing experiments with simulation reveals that the solubility product can be predictive of the interactions underlying phase separation, even if small oligomers and low affinity homotypic interactions complicate the analysis.

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来源期刊
Molecular Biology of the Cell
Molecular Biology of the Cell 生物-细胞生物学
CiteScore
6.00
自引率
6.10%
发文量
402
审稿时长
2 months
期刊介绍: MBoC publishes research articles that present conceptual advances of broad interest and significance within all areas of cell, molecular, and developmental biology. We welcome manuscripts that describe advances with applications across topics including but not limited to: cell growth and division; nuclear and cytoskeletal processes; membrane trafficking and autophagy; organelle biology; quantitative cell biology; physical cell biology and mechanobiology; cell signaling; stem cell biology and development; cancer biology; cellular immunology and microbial pathogenesis; cellular neurobiology; prokaryotic cell biology; and cell biology of disease.
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