SNW-1 的基因组特征,SNW-1 是深海喷口化石自养型 Sulfurimonas indica NW79 的一种新型噬菌体。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-07-29 eCollection Date: 2024-01-01 DOI:10.1590/1678-4685-GMB-2023-0355
Xiaofeng Li, Ruolin Cheng, Chuanxi Zhang, Zongze Shao
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引用次数: 0

摘要

全球广泛分布的硫华球藻属在不同的栖息地(包括深海热液喷口)发挥着重要作用。然而,迄今为止,感染硫华菌的噬菌体从未被分离和鉴定。本研究从 Sulfurimonas indica NW79 中发现了一种新型噬菌体 SNW-1。全基因组测序的结果是一个 37,096 bp 的环状双链 DNA 分子,G+C 含量为 37 摩尔%。基因组包括 64 个推测的开放阅读框,其中 33 个编码具有预测功能的蛋白质。与 Caudoviricetes 相关的标志性基因以及参与溶解和溶酶作用的基因的存在表明,SNW-1 应该是一种温带有尾噬菌体。系统发生学和比较蛋白质组学分析表明,Sulfurimonas噬菌体SNW-1有别于其他双链DNA噬菌体,可能代表了一个新的病毒属。
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Genomic characterization of SNW-1, a novel prophage of the deep-sea vent chemolithoautotroph Sulfurimonas indica NW79.

The globally widespread genus Sulfurimonas are playing important roles in different habitats, including the deep-sea hydrothermal vents. However, phages infecting Sulfurimonas have never been isolated and characterized to date. In the present study, a novel prophage SNW-1 was identified from Sulfurimonas indica NW79. Whole genome sequencing resulted in a circular, double-stranded DNA molecule of 37,096 bp with a mol% G+C content of 37. The genome includes 64 putative open reading frames, 33 of which code for proteins with predicted functions. Presence of hallmark genes associated with Caudoviricetes and genes involved in lysis and lysogeny indicated that SNW-1 should be a temperate, tailed phage. Phylogenetic and comparative proteomic analyses suggested that Sulfurimonas phage SNW-1 was distinct from other double stranded DNA phages and might represent a new viral genus.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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